LouisRanjard / nucleoveq Public

vector quantization for nucleotide sequences

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Name		Name	Last commit message	Last commit date
Latest commit History 44 Commits
.gitignore		.gitignore
DTWave.c		DTWave.c
DTWave.mexa64		DTWave.mexa64
DTWaverage.m		DTWaverage.m
ETDTWrec.m		ETDTWrec.m
LICENSE		LICENSE
Learning_rate.pdf		Learning_rate.pdf
Learning_rate.tex		Learning_rate.tex
README.md		README.md
TreeDist.m		TreeDist.m
alignreadsvq.m		alignreadsvq.m
avedist.m		avedist.m
conseq.m		conseq.m
deltip.m		deltip.m
densipeak.m		densipeak.m
dtwavetree.m		dtwavetree.m
dtwnucleo.m		dtwnucleo.m
entrop_trim.m		entrop_trim.m
findBMU.m		findBMU.m
fortify.m		fortify.m
lnode.m		lnode.m
m_dtwnucleo.m		m_dtwnucleo.m
mat2nucleo.m		mat2nucleo.m
movimean.m		movimean.m
mutatematseq.m		mutatematseq.m
nsequence.m		nsequence.m
nucleo2mat.m		nucleo2mat.m
numvarsites.m		numvarsites.m
p_SHR.m		p_SHR.m
plot_dtwnucleo.m		plot_dtwnucleo.m
plotnucleoveq.m		plotnucleoveq.m
printmat.m		printmat.m
pruneEtree.m		pruneEtree.m
pruneTip.m		pruneTip.m
qual2accu.m		qual2accu.m
randmatseq.m		randmatseq.m
readcoverage.m		readcoverage.m
reversecomplement.m		reversecomplement.m
routines_DNA_etree.m		routines_DNA_etree.m
shannonEntropy.m		shannonEntropy.m
shannonEntropy_s.m		shannonEntropy_s.m
shannonEtree.m		shannonEtree.m
sim_haplotypes.m		sim_haplotypes.m
sim_reads.m		sim_reads.m
smap.m		smap.m
vqdist.m		vqdist.m
vqreads.m		vqreads.m
vqreadsplit.m		vqreadsplit.m
wcoverage.m		wcoverage.m
weight2fasta.m		weight2fasta.m
windowsa.m		windowsa.m