Pinned

1. SchriderLab/Timesweeper SchriderLab/Timesweeper Public

   Python package for detecting positive selective sweeps using time-series genomics sampling data.

   Python 16 2

2. SchriderLab/timesweeper-experiments SchriderLab/timesweeper-experiments Public

   Repo for experiments for the TimeSweeper manuscript.

   Jupyter Notebook 3 1

3. PhyloMatcher PhyloMatcher Public

   Python module to query GBIF or the NCBI Taxonomy database for synonym names of target species.

   Python 3 1

4. conda-tutorial conda-tutorial Public

   A little bit of documentation explaining how to use conda environments for reproducible bioinformatics.

   3

5. bioinfo-links bioinfo-links Public

   I got tired of bookmarking everything I found useful in my browser, so here's an organized list of stuff I think is useful/cool.

   5

6. diatom-metatranscriptomics diatom-metatranscriptomics Public

   Marchetti lab pipeline for diatom metatranscriptomics analyses using Kallisto, Diamond, and DeSeq2 in conjunction with PhyloDB.

   HTML 1