GitHub - LunarFawn/vrna-hack: A hack of the ViennaRNA package for supporting ligands binding and other motifs

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A hack of the ViennaRNA package for supporting ligands binding and other motifs - ElNando888's code

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Name		Name	Last commit message	Last commit date
Latest commit History 35 Commits
Cluster		Cluster
H		H
Kinfold		Kinfold
Progs		Progs
RNAforester		RNAforester
Readseq		Readseq
Utils		Utils
config		config
doc		doc
interfaces		interfaces
lib		lib
libsvm-2.91		libsvm-2.91
m4		m4
man		man
misc		misc
.gitignore		.gitignore
AUTHORS		AUTHORS
COPYING		COPYING
ChangeLog		ChangeLog
INSTALL		INSTALL
INSTALL.configure		INSTALL.configure
Makefile.am		Makefile.am
Makefile.in		Makefile.in
NEWS		NEWS
README		README
README.orig		README.orig
RNAlib2.pc.in		RNAlib2.pc.in
THANKS		THANKS
acinclude.m4		acinclude.m4
aclocal.m4		aclocal.m4
compile		compile
config.guess		config.guess
config.h.in		config.h.in
config.sub		config.sub
configure		configure
configure.ac		configure.ac
depcomp		depcomp
install-sh		install-sh
missing		missing

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The goal of this hack/fork is to implement ligand binding routines as properly
as possible (correct MFEs and partition functions)

See README.orig and http://www.tbi.univie.ac.at/RNA/ for details about the
original package.

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Example:
$ Progs/RNAfold --ligand FMN:200

will fold sequences assuming 200 uM of FMN in the solution.