Pinned

1. vargen vargen Public

   VarGen is an R package designed to get a list of variants related to a disease. It just need an OMIM morbid ID as input and optionally a list of tissues / gwas traits of interest to complete the re…

   R 13 3

2. FadyMohareb/mapoptics FadyMohareb/mapoptics Public

   MapOptics is a lightweight cross-platform tool that enables the user to visualise and interact with the alignment of Bionano optical mapping data and can be used for in depth exploration of hybrid …

   Java 16 5

3. Solanum_chilense_assembly Solanum_chilense_assembly Public

   Scripts and files used to perform the de novo assembly of Solanum chilense (LA1972)

   Perl

4. sra-cleaning sra-cleaning Public

   Python script to automatically parse a "Contamination.txt" file from the Sequence Reads Archive (SRA) and correct the assembly FASTA file and annotation GTF file.

   Python

5. tutorial-kmer-spectra tutorial-kmer-spectra Public

   R markdown explaining k-mer spectra, and how sequencing errors and heterozygosity are affecting them.

6. plot_transcripts_filtering.py plot_transcripts_filtering.py Public

   Script to plot the number of transcripts left after filtering by low expression

   Python 3 1