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fix TRZ file reader on big-endian architectures #1425

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wants to merge 12 commits into from
Closed

fix TRZ file reader on big-endian architectures #1425

wants to merge 12 commits into from

Commits on Jun 9, 2017

  1. use correct int types 

    This fixes ERRORs and FAILs in the testsuite on 32bit:

TypeError: Cannot cast array data from dtype('int64') to dtype('int32') according to the rule 'safe'

and

assert_(out[0].dtype == np.int64)
  File "/usr/lib/python2.7/site-packages/numpy/testing/utils.py", line 92, in assert_
    raise AssertionError(smsg)
AssertionError
    @rathann
    rathann committed Jun 9, 2017
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  2. relax test_symmetry test due to lower precision on 32bit

    @rathann
    rathann committed Jun 9, 2017
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Commits on Jun 17, 2017

  1. Aesthetic fixes to test_gro 

    Removed TestCase usage
    @richardjgowers @rathann
    richardjgowers authored and rathann committed Jun 17, 2017
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  2. Added tests for issue #1395

    @richardjgowers @rathann
    richardjgowers authored and rathann committed Jun 17, 2017
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  3. Added lib.util.ltruncate_integer

    @richardjgowers @rathann
    richardjgowers authored and rathann committed Jun 17, 2017
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  4. Changed coordinate writers to use ltruncate_int 

    Fixes issue #1395
    @richardjgowers @rathann
    richardjgowers authored and rathann committed Jun 17, 2017
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  5. More work on making indexing arrays use intp (#1362) 

    - Added tests for 32 bit index support
- added @rathann to AUTHORS
    @richardjgowers @rathann
    richardjgowers authored and rathann committed Jun 17, 2017
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  6. Explicitly define __hash__ for groups 

    Groups (AtomGroup, ResidueGroup, SegmentGroup) cannot be stored in sets
or used as dict key if they are not hashable. In python 3, the __hash__
method is not defined implicitly anymore when a class has a __eq__ method.

Fixes #1397
    @jbarnoud @rathann
    jbarnoud authored and rathann committed Jun 17, 2017
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Commits on Jun 18, 2017

  1. Merge remote-tracking branch 'upstream/develop' into develop

    @rathann
    rathann committed Jun 18, 2017
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  2. fix int type in asserts in TestDownshiftArrays 

    this was missed in eed7761
    @rathann
    rathann committed Jun 18, 2017
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Commits on Jun 22, 2017

  1. Merge branch 'develop' of https://github.com/MDAnalysis/mdanalysis in… 

    …to develop
    @rathann
    rathann committed Jun 22, 2017
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  2. fix TRZ file reader on big-endian arches 

    Numpy dtype int (iN) and float (fN) specifiers assume native-endian
by default, so force them to be little-endian.

Closes #1424.
    @rathann
    rathann committed Jun 22, 2017
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