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document (and test) setting DX array type (#1725) #1746

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merged 1 commit into from Jan 22, 2018

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@orbeckst orbeckst commented Dec 19, 2017

Fixes #1725

Changes made in this Pull Request:

PR Checklist

  • Tests?
  • Docs?
  • CHANGELOG updated?
  • Issue raised/referenced?

@orbeckst
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This is going to fail until we have a 0.4.0 release of GridDataFormats (which requires merging of PR MDAnalysis/GridDataFormats#36).

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Resolved a conflict (through GH) and let the tests run again (now that GridDataFormats has ana official 0.4.0 release) out.

@orbeckst orbeckst self-assigned this Jan 21, 2018
- requires gridDataFormats >= 0.4.0
- documented that PyMOL requires type="double" (see
  MDAnalysis/GridDataFormats#35 for details)
- link to GridDataFormats docs for OpenDX type
- use intersphinx to the mdanalysis.org GridDataFormats docs
  instead of RTD (better brand experience by staying inside mdanalysis.org...)
- added tests for Density.export(..., type=<type>) -- note
  that they really only test gridData.Grid.export()
- updated CHANGELOG
- fixes #1725
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Fixed a sphinx issue, added a link to the GDF docs, and use our mdanalysis.org-hosted GDF docs instead of the RTD-hosted ones for intersphinx links for the docs. Rebased and force-pushed.

@orbeckst orbeckst added this to the 0.17.0 milestone Jan 21, 2018
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The failing tests are either #1756 (which gets fixed with PR #1757) or a numpy dependency error

UnsatisfiableError: The following specifications were found to be in conflict:
  - numpy 1.14* -> python >=2.7,<2.8.0a0
  - python 3.4*

The doc test passes so I am going to merge this.

@orbeckst orbeckst merged commit e3a6bf5 into develop Jan 22, 2018
@orbeckst orbeckst deleted the issue-1725-DX-type-double branch January 22, 2018 00:30
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2 participants