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RdkitConverter with sanitization #2799

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@cbouy cbouy commented Jun 26, 2020

Part of the fixes for #2468
Follow-up of #2775

Changes made in this Pull Request:

  • inferring bond order and formal charge from the connectivity when all hydrogen atoms are in the molecule

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cbouy commented Jun 26, 2020

Without inferring:
image

With:
image

PS: their are radicals because I'm I'm just selecting a residue so some bonds are cut

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cbouy commented Jun 26, 2020

When hydrogens are missing it gets pretty bad though
image

@cbouy cbouy mentioned this pull request Jul 2, 2020
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@cbouy cbouy closed this Jul 30, 2020
@cbouy cbouy deleted the rdkit-sanitize branch July 31, 2020 09:36
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