Adding mlog.py and editing some other files.

MCP

@@ -10,7 +10,7 @@ from ConfigParser import SafeConfigParser
 # Getting paths
 MCP_path = os.path.realpath(__file__)
 matchObj = re.match(r'(^.*\/)', MCP_path)
-MCP_dir = matchObj.group()
+MCP_dir = matchObj.group(0)
 
 # Adding modules directory to path
 path = list(sys.path)

mlog_libs/mlog.pm

@@ -15,7 +15,7 @@ use Sys::Syslog qw( :DEFAULT setlogsock);
 
 require Exporter;
 
-my $mlog_conf_file = "/etc/mlog/mlog.conf";
+my $MLOG_CONF_FILE = "/etc/mlog/mlog.conf";
 my $DEFAULT_LOG_LEVEL = 6;
 my $MSG_CHECK_COUNT = 100;
 my $MSG_CHECK_INTERVAL = 300; # 300s = 5min
@@ -38,7 +38,7 @@ mlog
 
 =head1 DESCRIPTION
 
-A wrapper for sending MGRAST logging to syslog.
+A library for sending MG-RAST logging to syslog.
 
 =head1 METHODS
 
@@ -48,7 +48,7 @@ logit(level, component, message, error_code): sends mgrast log message to syslog
 
 =over 10
 
-=item * level: (0-6) The logging level for this message is compared to the logging level that has been set in MGRAST_syslog.  If it is <= the set logging level, the message will be sent to syslog, otherwise it will be ignored.  Logging level is set to 6 if MGRAST control API cannot be reached.
+=item * level: (0-6) The logging level for this message is compared to the logging level that has been set in mlog.  If it is <= the set logging level, the message will be sent to syslog, otherwise it will be ignored.  Logging level is set to 6 if MG-RAST control API cannot be reached.
 
 =item * component: (string) This is the utility within MG-RAST that is logging the message.  This is a free text field.
 
@@ -90,33 +90,16 @@ use_api_log_level(string component) : Removes the user-defined log level for thi
 
 =cut
 
-sub _get_log_level {
-    my ($component) = @_;
-    if(exists $user_defined_log_levels{$component}) {
-        return $user_defined_log_levels{$component};
-    } elsif(exists $api_defined_log_levels{$component}) {
-        return $api_defined_log_levels{$component};
-    } else {
-        return $DEFAULT_LOG_LEVEL;
-    }
-}
-
-sub _get_time_since_start {
-    my $now = DateTime->now( time_zone => 'local' )->set_time_zone('floating');
-    my $seconds_duration = $now->subtract_datetime_absolute($last_update_time);
-    return $seconds_duration->seconds;
-}
-
 sub init_mlog {
     $last_update_msg_count = 0;
     $last_update_time = DateTime->now( time_zone => 'local' )->set_time_zone('floating');
 
     # Retrieving the control API defined log levels...
     my $api_mlog_url = "";
-    open IN, "$mlog_conf_file" || print STDERR "Cannot open $mlog_conf_file for reading mlog configuration.\n";
+    open IN, "$MLOG_CONF_FILE" || print STDERR "Cannot open $MLOG_CONF_FILE for reading mlog configuration.\n";
     while(my $line=<IN>) {
         chomp $line;
-        if($line =~ /^url.*$/) {
+        if($line =~ /^url\s+.*$/) {
             my @array = split(/\s+/, $line);
             $api_mlog_url = $array[1];
         }
@@ -136,6 +119,23 @@ sub init_mlog {
     return 1;
 }
 
+sub _get_log_level {
+    my ($component) = @_;
+    if(exists $user_defined_log_levels{$component}) {
+        return $user_defined_log_levels{$component};
+    } elsif(exists $api_defined_log_levels{$component}) {
+        return $api_defined_log_levels{$component};
+    } else {
+        return $DEFAULT_LOG_LEVEL;
+    }
+}
+
+sub _get_time_since_start {
+    my $now = DateTime->now( time_zone => 'local' )->set_time_zone('floating');
+    my $seconds_duration = $now->subtract_datetime_absolute($last_update_time);
+    return $seconds_duration->seconds;
+}
+
 sub set_log_level {
     my ($level, $component) = @_;
     if($level !~ /^\d+$/ || $component eq "") {
@@ -186,16 +186,19 @@ sub logit {
         return 0;
     }
 
-    if($msg_count == 0 && $last_update_time eq "") {
-        print STDERR "WARNING: mlog_init() was not called, so I will call it for you.\n";
-        mlog_init();
-    }
-
     unless($level =~ /^\d+$/ && $level >= 0 && $level <= 6) {
       print STDERR "ERROR: mlog level '$level' is invalid, you must enter an integer between 0 and 6, inclusive.\n";
       return 0;
     }
 
+    ++$msg_count;
+    ++$last_update_msg_count;
+
+    if($msg_count == 0 && $last_update_time eq "") {
+        print STDERR "WARNING: mlog_init() was not called, so I will call it for you.\n";
+        mlog_init();
+    }
+
     # May want to include these in 1st openlog argument
     my $user = $ENV{'USER'};
     my $ident = abs_path($0);

mlog_libs/mlog.py

@@ -0,0 +1,103 @@
+"""
+NAME
+       mlog
+
+DESCRIPTION
+       A library for sending MG-RAST logging to syslog.
+
+METHODS
+       init_mlog(): Initializes mlog. It's good to call this at the beginning of your program.
+
+       logit(level, component, message, error_code): sends mgrast log message to syslog.
+
+       *         level: (0-6) The logging level for this message is compared to the logging level that has been set in
+                 mlog.  If it is <= the set logging level, the message will be sent to syslog, otherwise it will be
+                 ignored.  Logging level is set to 6 if MG-RAST control API cannot be reached.
+
+       *         component: (string) This is the utility within MG-RAST that is logging the message.  This is a free
+                 text field.
+
+       *         message: (string) This is the log message.
+
+       *         error_code: (string) The error code for this log message.
+
+       set_log_level(integer level, string component) : Sets the logging level of the given component. Only use this if
+       you wish to override the log levels that are defined by the control API.
+
+       *         level : priority
+
+       *         0 : emergencies - vital component is down
+
+       *         1 : alerts - non-vital component is down
+
+       *         2 : errors - error that prevents proper operation
+
+       *         3 : warning - error, but does not prevent operation
+
+       *         4 : debug - lowest level of debug
+
+       *         5 : debug2 - second level of debug
+
+       *         6 : debug3 - highest level of debug
+
+       set_log_msg_check_count(integer count): used to set the number the messages that mlog will log before querying
+       the control API for the log level of all components (default is 100 messages).
+
+       set_log_msg_check_interval(integer seconds): used to set the interval, in seconds, that will be allowed to pass
+       before  mlog will  query the control API for the log level of the given component (default is 300 seconds).
+
+       use_all_api_log_levels() : Removes all user-defined log levels and tells mlog to use the control API defined log
+       levels.
+
+       use_api_log_level(string component) : Removes the user-defined log level for this component and tells mlog to use
+       the control API defined log levels.
+
+"""
+
+import datetime, re
+
+#__all__ = ["mlog", "set_log_level", "set_log_msg_check_count", "set_log_msg_check_interval", "logit", "use_all_api_log_levels", "use_api_log_level"]
+
+MLOG_CONF_FILE = "/etc/mlog/mlog.conf"
+DEFAULT_LOG_LEVEL = 6
+MSG_CHECK_COUNT = 100
+MSG_CHECK_INTERVAL = 300 # 300s = 5min
+LOG_LEVEL_TEXT = [ 'emerg', 'alert', 'crit', 'err',
+                   'warning', 'notice', 'info', 'debug' ]
+
+api_defined_log_levels = {}
+user_defined_log_levels = {}
+msg_count = 0
+last_update_time = ""
+last_update_msg_count = 0
+
+class mlog():
+    """
+    This class contains the methods necessary for sending MG-RAST log messages.
+    """
+
+    def __init__(self):
+        self.last_update_msg_count = 0
+        self.last_update_time = datetime.datetime.now()
+
+        api_mlog_url = ""
+        for line in open(MLOG_CONF_FILE):
+            line.strip()
+            if(re.match(r'^url\s+', line)):
+                api_mlog_url = line.split()[1]
+
+        if(api_mlog_url != ""):
+            import json
+            import urllib2
+
+            data = json.load(urllib2.urlopen(api_mlog_url))
+            for components in data['components']:
+                api_defined_log_levels[components['name']] = components['log_level']
+
+    def _get_log_level(self, component):
+        if(component in api_defined_log_levels):
+            return api_defined_log_levels[component]
+        elif(component in user_defined_log_levels):
+            return user_defined_log_levels[component]
+        else:
+            return DEFAULT_LOG_LEVEL