added more sql commands

MG-RAST · Oct 29, 2012 · fe3790b · fe3790b
1 parent 655e99e
commit fe3790b
Showing 1 changed file with 18 additions and 0 deletions.
diff --git a/src/MGRAST/Schema/mgrast_analysis_v3.sql b/src/MGRAST/Schema/mgrast_analysis_v3.sql
@@ -13,6 +13,7 @@ BEGIN
 END;
 $$ language 'plpgsql';
 
+DROP TABLE IF EXISTS job_info;
 CREATE TABLE job_info (
  updated_on timestamp NOT NULL DEFAULT LOCALTIMESTAMP,
  version smallint NOT NULL,
@@ -24,6 +25,7 @@ CREATE UNIQUE INDEX job_info_loaded ON job_info (loaded);
 CREATE UNIQUE INDEX job_info_rna ON job_info (rna_only);
 CREATE TRIGGER job_info_update_timestamp BEFORE UPDATE ON job_info FOR EACH ROW EXECUTE PROCEDURE update_timestamp();
 
+DROP TABLE IF EXISTS job_md5s;
 CREATE TABLE job_md5s (
  version smallint NOT NULL,
  job integer NOT NULL,
@@ -45,6 +47,7 @@ CREATE UNIQUE INDEX job_md5s_key ON job_md5s (version, job, md5);
 CREATE INDEX job_md5s_job_protein ON job_md5s (job, is_protein);
 CREATE INDEX job_md5s_seek_length ON job_md5s (seek, length);
 
+DROP TABLE IF EXISTS job_functions;
 CREATE TABLE job_functions (
  version smallint NOT NULL,
  job integer NOT NULL,
@@ -62,6 +65,7 @@ CREATE TABLE job_functions (
 #COPY job_functions (version,job,function,abundance,exp_avg,exp_stdv,len_avg,len_stdv,ident_avg,ident_stdv,md5s,source) FROM 'FILE' WITH NULL AS '';
 CREATE UNIQUE INDEX job_functions_key ON job_functions (version, job, function, source);
 
+DROP TABLE IF EXISTS job_organisms;
 CREATE TABLE job_organisms (
  version smallint NOT NULL,
  job integer NOT NULL,
@@ -79,6 +83,7 @@ CREATE TABLE job_organisms (
 #COPY job_organisms (version,job,organism,abundance,exp_avg,exp_stdv,len_avg,len_stdv,ident_avg,ident_stdv,md5s,source) FROM 'FILE' WITH NULL AS '';
 CREATE UNIQUE INDEX job_organisms_key ON job_organisms (version, job, organism, source);
 
+DROP TABLE IF EXISTS job_rep_organisms;
 CREATE TABLE job_rep_organisms (
  version smallint NOT NULL,
  job integer NOT NULL,
@@ -95,6 +100,7 @@ CREATE TABLE job_rep_organisms (
 );
 CREATE UNIQUE INDEX job_rep_organisms_key ON job_rep_organisms (version, job, organism, source);
 
+DROP TABLE IF EXISTS job_ontologies;
 CREATE TABLE job_ontologies (
  version smallint NOT NULL,
  job integer NOT NULL,
@@ -112,6 +118,7 @@ CREATE TABLE job_ontologies (
 #COPY job_ontologies (version,job,id,abundance,exp_avg,exp_stdv,len_avg,len_stdv,ident_avg,ident_stdv,md5s,source) FROM 'FILE' WITH NULL AS '';
 CREATE UNIQUE INDEX job_ontologies_key ON job_ontologies (version, job, id, source);
 
+DROP TABLE IF EXISTS job_lcas;
 CREATE TABLE job_lcas (
  version smallint NOT NULL,
  job integer NOT NULL,
@@ -130,12 +137,14 @@ CREATE TABLE job_lcas (
 CREATE UNIQUE INDEX job_lcas_key ON job_lcas (version, job, lca);
 CREATE INDEX job_lcas_level ON job_lcas (level);
 
+DROP TABLE IF EXISTS functions;
 CREATE TABLE functions (
  _id SERIAL PRIMARY KEY,
  name text NOT NULL
 );
 CREATE INDEX functions_name ON functions (name);
 
+DROP TABLE IF EXISTS organisms_ncbi;
 CREATE TABLE organisms_ncbi (
  _id SERIAL PRIMARY KEY,
  name text NOT NULL,
@@ -153,6 +162,15 @@ CREATE TABLE organisms_ncbi (
 CREATE INDEX organisms_ncbi_name ON organisms_ncbi (name);
 CREATE INDEX organisms_ncbi_tax_id ON organisms_ncbi (ncbi_tax_id);
 
+DROP TABLE IF EXISTS md5_organism_unique;
+CREATE TABLE md5_organism_unique (
+md5 char(32) NOT NULL,
+organism integer NOT NULL,
+source text
+);
+CREATE INDEX md5_organism_unique_key ON md5_organism_unique (md5, source);
+
+DROP TABLE IF EXISTS ontologies;
 CREATE TABLE ontologies (
  _id SERIAL PRIMARY KEY,
  level1 text,