Skip to content

Commit

Permalink
more images
Browse files Browse the repository at this point in the history
  • Loading branch information
lee212 committed Jun 16, 2015
1 parent f53c60f commit 4609dfe
Show file tree
Hide file tree
Showing 3 changed files with 17 additions and 4 deletions.
Binary file added docs/source/images/galaxy-download.png
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file added docs/source/images/galaxy-view-data.png
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
21 changes: 17 additions & 4 deletions docs/source/tutorial.rst
Original file line number Diff line number Diff line change
Expand Up @@ -214,26 +214,39 @@ You can download the output files to your local storage, or get access to
Genome Browser with provided links.

Visualization: UCSC or Ensembl Genome Browser
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
"""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""

Your genomic data in a Generic Feature Format Version 3 (gff3) can be displayed
by a well known visualization tool such as UCSC or Ensembl Genome Browser on
Galaxy with custom annotation of MGEScan for LTR and nonLTR. Find the link
Galaxy with custom annotations of MGEScan for LTR and nonLTR. Find the link
provided for gff3 to view interactive graphical display of genome sequence
data.

.. image:: images/mgescan-genome-browser.png

UCSC Genome Browser
UCSC Genome Browser (Example View)
"""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""

.. image:: images/rtm-ltr-gff3-ucsc-browser.png

Ensembl
Ensembl (Example View)
"""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""

.. image:: images/rtm-ltr-gff3-ensembl.png

Additional Options
"""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""

There are other options to view results on a web interface or local.

* View data: Content of the result file

.. image:: images/galaxy-view-data.png

* Download: Download the file

.. image:: images/galaxy-download.png

Download Results
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

Expand Down

0 comments on commit 4609dfe

Please sign in to comment.