Update tool_dependencies.xml

MGEScan · Feb 15, 2016 · 7775601 · 7775601
1 parent cdbae16
commit 7775601
Showing 1 changed file with 5 additions and 3 deletions.
diff --git a/galaxy-toolshed/packages/package_mgescan_3/tool_dependencies.xml b/galaxy-toolshed/packages/package_mgescan_3/tool_dependencies.xml
@@ -6,6 +6,7 @@
     <package name="mgescan" version="3">
         <install version="1.0">
             <actions_group>
+            	<!--
                 <actions architecture="x86_64" os="linux">
 			<action type="download_by_url">
 				https://github.com/MGEScan/mgescan/archive/1.0.tar.gz
@@ -15,6 +16,7 @@
                         <destination_directory>$INSTALL_DIR</destination_directory>
                     </action>
                 </actions>
+                -->
                 <actions>
 		<action type="download_by_url">
 				https://github.com/MGEScan/mgescan/archive/1.0.tar.gz
@@ -24,15 +26,15 @@
                             <package name="trf" version="4.0" />
                         </repository>
                     </action>
-                    <action type="shell_command">cd mgescan-1.0</action>
                     <action type="shell_command">python setup.py install</action>
                     <action type="move_file">
                         <source>mgescan</source>
-                        <destination>$INSTALL_DIR/bin</destination>
+                        <destination>$INSTALL_DIR/mgescan</destination>
                     </action>
                 </actions>
                 <action type="set_environment">
-                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/mgescan</environment_variable>
+                    <environment_variable action="path_to" name="MGESCAN_SRC">$INSTALL_DIR</environment_variable>
                 </action>
             </actions_group>
         </install>