minor comment

MGEScan · Feb 9, 2016 · a05b2a8 · a05b2a8
1 parent 00a80ed
commit a05b2a8
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diff --git a/mgescan/nonltr/post_process.pl b/mgescan/nonltr/post_process.pl
@@ -2,6 +2,7 @@
 use strict;
 use Getopt::Long;
 
+my $debug;
 ##########################################################
 # get input parameter of dna file, pep file, output dir
 ##########################################################

diff --git a/mgescan/nonltr/run_hmm.pl b/mgescan/nonltr/run_hmm.pl
@@ -75,6 +75,7 @@
 	}
 
 	$out_file = $out1_dir.$dna_name;
+	# MGEScan -m ./hmm/chr.hmm -s ./aaa/NC_003070.9.fa -r ./test/f/pos/NC_003070.9.fa.rt.pos -a ./test/f/pos/NC_003070.9.fa.ape.pos -o ./test/f/out1/NC_003070.9.fa -p ./ -d ./test/f/out1/ -v 3
 	$command = $pdir."hmm/MGEScan -m ".$pdir."hmm/chr.hmm -s ".$dna_file." -r ".$domain_rt_pos_file." -a ".$domain_ape_pos_file." -o ".$out_file." -p ".$pdir." -d ".$out1_dir." -v ".$hmmerv;
 	print $command."\n" if ($debug);
 	system($command);