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Merge e4012a8 into 184a5ab
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@ssolson
ssolson committed Apr 30, 2024
2 parents 184a5ab + e4012a8 commit 6c41235
Showing 1 changed file with 52 additions and 53 deletions.
105 changes: 52 additions & 53 deletions .github/workflows/main.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -57,30 +57,30 @@ jobs:
- name: Checkout code
uses: actions/checkout@v4

- name: Setup Conda
uses: s-weigand/setup-conda@v1
- name: Setup Miniconda
uses: conda-incubator/setup-miniconda@v3
with:
activate-conda: false
conda-channels: conda-forge
miniconda-version: 'latest'
auto-update-conda: true
python-version: ${{ env.PYTHON_VER }}
activate-environment: TESTconda
use-only-tar-bz2: true

- name: Python setup
- name: Setup Conda environment
shell: bash -l {0}
run: |
conda create --name TEST python=${{ env.PYTHON_VER }} numpy cython pip hdf5 libnetcdf cftime netcdf4 --strict-channel-priority
source activate TEST
export PATH="${CONDA_PREFIX}/bin:${CONDA_PREFIX}/Library/bin:$PATH"
pip install -e . --no-deps --force-reinstall
conda install numpy cython pip hdf5 libnetcdf cftime netcdf4 --strict-channel-priority
pip install -e . --force-reinstall

- name: Install dependencies
shell: bash -l {0}
run: |
source activate TEST
python -m pip install --upgrade pip wheel
pip install coverage pytest coveralls .

- name: Prepare non-hindcast API data
shell: bash -l {0}
run: |
source activate TEST
pytest mhkit/tests/river/test_io_usgs.py
pytest mhkit/tests/tidal/test_io.py
pytest mhkit/tests/wave/io/test_cdip.py
Expand All @@ -101,30 +101,30 @@ jobs:
- name: Checkout code
uses: actions/checkout@v4

- name: Setup Conda
uses: s-weigand/setup-conda@v1
- name: Setup Miniconda
uses: conda-incubator/setup-miniconda@v3
with:
activate-conda: false
conda-channels: conda-forge
miniconda-version: 'latest'
auto-update-conda: true
activate-environment: TEST
python-version: ${{ matrix.python-version }}
use-only-tar-bz2: true

- name: Python setup
- name: Setup Conda environment
shell: bash -l {0}
run: |
conda create --name TEST python=${{ env.PYTHON_VER }} numpy cython pip hdf5 libnetcdf cftime netcdf4 --strict-channel-priority
source activate TEST
export PATH="${CONDA_PREFIX}/bin:${CONDA_PREFIX}/Library/bin:$PATH"
conda install numpy cython pip pytest hdf5 libnetcdf cftime netcdf4 coverage --strict-channel-priority
pip install -e . --no-deps --force-reinstall

- name: Install dependencies
shell: bash -l {0}
run: |
source activate TEST
python -m pip install --upgrade pip wheel
pip install coverage pytest coveralls .

- name: Prepare Wave Hindcast data
shell: bash -l {0}
run: |
source activate TEST
pytest mhkit/tests/wave/io/hindcast/test_hindcast.py

- name: Upload Wave Hindcast data as artifact
Expand All @@ -143,30 +143,30 @@ jobs:
- name: Checkout code
uses: actions/checkout@v4

- name: Setup Conda
uses: s-weigand/setup-conda@v1
- name: Setup Miniconda
uses: conda-incubator/setup-miniconda@v3
with:
activate-conda: false
conda-channels: conda-forge
miniconda-version: 'latest'
auto-update-conda: true
activate-environment: TEST
python-version: ${{ matrix.python-version }}
use-only-tar-bz2: true

- name: Python setup
- name: Setup Conda environment
shell: bash -l {0}
run: |
conda create --name TEST python=${{ env.PYTHON_VER }} numpy cython pip hdf5 libnetcdf cftime netcdf4 --strict-channel-priority
source activate TEST
export PATH="${CONDA_PREFIX}/bin:${CONDA_PREFIX}/Library/bin:$PATH"
conda install numpy cython pip pytest hdf5 libnetcdf cftime netcdf4 coverage --strict-channel-priority
pip install -e . --no-deps --force-reinstall

- name: Install dependencies
shell: bash -l {0}
run: |
source activate TEST
python -m pip install --upgrade pip wheel
pip install coverage pytest coveralls .

- name: Prepare Wind Hindcast data
shell: bash -l {0}
run: |
source activate TEST
pytest mhkit/tests/wave/io/hindcast/test_wind_toolkit.py

- name: Upload Wind Hindcast data as artifact
Expand All @@ -190,24 +190,24 @@ jobs:
steps:
- uses: actions/checkout@v4

- name: Setup Conda
uses: s-weigand/setup-conda@v1
- name: Setup Miniconda
uses: conda-incubator/setup-miniconda@v3
with:
activate-conda: false
conda-channels: conda-forge
miniconda-version: 'latest'
auto-update-conda: true
activate-environment: TEST
python-version: ${{ matrix.python-version }}
use-only-tar-bz2: true

- name: Python ${{ matrix.python-version }}
- name: Create and setup Conda environment
shell: bash -l {0}
run: |
conda create --name TEST python=${PYTHON_VER} numpy cython pip hdf5 libnetcdf cftime netcdf4 --strict-channel-priority
source activate TEST
export PATH="${CONDA_PREFIX}/bin:${CONDA_PREFIX}/Library/bin:$PATH" # so setup.py finds nc-config
conda install numpy cython pip hdf5 libnetcdf cftime netcdf4 --strict-channel-priority
pip install -e . --no-deps --force-reinstall

- name: Install dependencies
shell: bash -l {0}
run: |
source activate TEST
python -m pip install --upgrade pip wheel
pip install coverage pytest coveralls .

Expand All @@ -220,13 +220,11 @@ jobs:
- name: Run pytest
shell: bash -l {0}
run: |
source activate TEST
coverage run --rcfile=.github/workflows/.coveragerc --source=./mhkit/ -m pytest -c .github/workflows/pytest.ini

- name: Upload coverage data to coveralls.io
shell: bash -l {0}
run: |
source activate TEST
coveralls --service=github
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
Expand Down Expand Up @@ -261,11 +259,13 @@ jobs:
path: ~/.cache/mhkit

- name: Update and install packages
shell: bash -l {0}
run: |
python -m pip install --upgrade pip wheel
pip install coverage pytest coveralls .

- name: Run pytest
shell: bash -l {0}
run: |
coverage run --rcfile=.github/workflows/.coveragerc --source=./mhkit/ -m pytest -c .github/workflows/pytest.ini

Expand Down Expand Up @@ -298,18 +298,19 @@ jobs:
steps:
- uses: actions/checkout@v4

- name: Setup Conda
uses: s-weigand/setup-conda@v1
- name: Setup Miniconda
uses: conda-incubator/setup-miniconda@v3
with:
activate-conda: false
conda-channels: conda-forge
miniconda-version: 'latest'
auto-update-conda: true
activate-environment: TEST
python-version: ${{ matrix.python-version }}
use-only-tar-bz2: true

- name: Python ${{ matrix.python-version }}
- name: Setup Conda environment
shell: bash -l {0}
run: |
conda create --name TEST python=${{ matrix.python-version }} numpy cython pip pytest hdf5 libnetcdf cftime netcdf4 coverage --strict-channel-priority
source activate TEST
export PATH="${CONDA_PREFIX}/bin:${CONDA_PREFIX}/Library/bin:$PATH" # so setup.py finds nc-config
conda install numpy cython pip pytest hdf5 libnetcdf cftime netcdf4 coverage --strict-channel-priority
pip install -e . --no-deps --force-reinstall

- name: Download Wave Hindcast data from artifact
Expand All @@ -334,15 +335,13 @@ jobs:
- name: Install MHKiT and run pytest
shell: bash -l {0}
run: |
source activate TEST
python -m pip install --upgrade pip wheel
pip install coveralls .
coverage run --rcfile=.github/workflows/.coveragehindcastrc -m pytest -c .github/workflows/pytest-hindcast.ini
coverage run --rcfile=.github/workflows/.coveragehindcastrc -m pytest -c .github/workflows/pytest-hindcast.ini

- name: Upload coverage data to coveralls.io
shell: bash -l {0}
run: |
source activate TEST
coveralls --service=github
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
Expand Down

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