Unable to install MITK-Diffusion

[YichengZou626]

Hi, I am trying to use MITKFiberDirectionExtraction to transform my own tck file into TOM, which is used for TractSeg model. However, I was stuck on how to install this software for Windows 10 and run the function. Could you please teach me how to install this, or can I show my own data for help? Thanks for your help!

[peterneher]

Dear Yicheng Zou, sorry for the late reply, I was on vacation. Simply download the installer here and follow the installation wizard https://github.com/MIC-DKFZ/MITK-Diffusion/#Downloads Then navigate to the installation folder an call MITKFiberDirectionExtraction.bat in the command line. One question though. TractSeg does not use TOMs, it generates TOMs from dMRI data. So if you have a tarctogram (e.g. .tck), you can not use this in any way with TractSeg. May I ask what you are trying to accomplish? Peter

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--------------------------------------------------------------------------------------------------- Dr. Peter Neher Division of Medical Image Computing Senior Scientist & Division Board Member German Cancer Research Center (DKFZ) Foundation under Public Law Im Neuenheimer Feld 280 69120 Heidelberg Germany phone: +49 6221 42-2330 I am mostly working from home at the moment and I am therefore probably not reachable via phone! ***@***.*** www.dkfz.de<http://www.dkfz.de/> Management Board: Prof. Dr. Michael Baumann, Ursula Weyrich VAT-ID No.: DE143293537

________________________________ Von: Yicheng Zou ***@***.***> Gesendet: Mittwoch, 1. Februar 2023 16:57 An: MIC-DKFZ/MITK-Diffusion Cc: Subscribed Betreff: [MIC-DKFZ/MITK-Diffusion] Unable to install MITK-Diffusion (Issue #8) Hi, I am trying to use MITKFiberDirectionExtraction to transform my own tck file into TOM, which is used for TractSeg model. However, I was stuck on how to install this software for Windows 10 and run the function. Could you please teach me how to install this, or can I show my own data for help? Thanks for your help! - Reply to this email directly, view it on GitHub<#8>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AEBK54BMQPGWJL3MPAHQQ6DWVKBWTANCNFSM6AAAAAAUN43AZU>. You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>

[wht-light]

Hello, I am trying to compile MITK-Diffusion, but the following problem occurs:

Could you please tell me how to solve this compilation problem?Thanks!

[wht-light]

Hello, may I ask whether mitk supports calling only compiled algorithm libraries such as segmentation module

[peterneher]

Hello, I am trying to compile MITK-Diffusion, but the following problem occurs: Could you please tell me how to solve this compilation problem?Thanks!

You are trying to build the current master of MITK Diffusuion with an older version of MITK. MITK recently removed OpenCV, and it was instead added to MITK Diffusion. Since you are using an older MITK version, two OpenCV targets exist, wich does not work.

I recommend to use the current MITK Master.

[peterneher]

Hello, may I ask whether mitk supports calling only compiled algorithm libraries such as segmentation module

I am not sure what you mean.