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import_csse_covid19_daily.py
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import_csse_covid19_daily.py
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#!/usr/bin/env python3
# -*- coding: utf-8 -*-
from pathlib import Path
from csv import DictReader
from pymisp import MISPEvent, MISPOrganisation, PyMISP, MISPObject
from datetime import datetime
from dateutil.parser import parse
import json
from pymisp.tools import feed_meta_generator
from io import BytesIO
from collections import defaultdict
make_feed = False
aggregate_by_country = True
path = Path('/home/raphael/gits/COVID-19/csse_covid_19_data/csse_covid_19_daily_reports/')
def get_country_region(row):
if 'Country/Region' in row:
return row['Country/Region']
elif 'Country_Region' in row:
return row['Country_Region']
else:
print(p, row.keys())
raise Exception()
def get_last_update(row):
if 'Last_Update' in row:
return parse(row['Last_Update'])
elif 'Last Update' in row:
return parse(row['Last Update'])
else:
print(p, row.keys())
raise Exception()
def add_detailed_object(obj, row):
if 'Province/State' in row:
if row['Province/State']:
obj.add_attribute('province-state', row['Province/State'])
elif '\ufeffProvince/State' in row:
if row['\ufeffProvince/State']:
obj.add_attribute('province-state', row['\ufeffProvince/State'])
elif 'Province_State' in row:
if row['Province_State']:
obj.add_attribute('province-state', row['Province_State'])
else:
print(p, row.keys())
raise Exception()
obj.add_attribute('country-region', get_country_region(row))
obj.add_attribute('update', get_last_update(row))
if 'Lat' in row:
obj.add_attribute('latitude', row['Lat'])
if 'Long_' in row:
obj.add_attribute('longitude', row['Long_'])
elif 'Long' in row:
obj.add_attribute('longitude', row['Long'])
if row['Confirmed']:
obj.add_attribute('confirmed', int(row['Confirmed']))
if row['Deaths']:
obj.add_attribute('death', int(row['Deaths']))
if row['Recovered']:
obj.add_attribute('recovered', int(row['Recovered']))
if 'Active' in row and row['Active']:
obj.add_attribute('active', int(row['Active']))
def country_aggregate(aggregate, row):
c = get_country_region(row)
if c not in aggregate:
aggregate[c] = defaultdict(active=0, death=0, recovered=0, confirmed=0, update=datetime.fromtimestamp(0))
if row['Confirmed']:
aggregate[c]['confirmed'] += int(row['Confirmed'])
if row['Deaths']:
aggregate[c]['death'] += int(row['Deaths'])
if row['Recovered']:
aggregate[c]['recovered'] += int(row['Recovered'])
if 'Active' in row and row['Active']:
aggregate[c]['active'] += int(row['Active'])
update = get_last_update(row)
if update > aggregate[c]['update']:
aggregate[c]['update'] = update
if make_feed:
org = MISPOrganisation()
org.name = 'CIRCL'
org.uuid = "55f6ea5e-2c60-40e5-964f-47a8950d210f"
else:
from covid_key import url, key
misp = PyMISP(url, key)
for p in path.glob('**/*.csv'):
d = datetime.strptime(p.name[:-4], '%m-%d-%Y').date()
event = MISPEvent()
if aggregate_by_country:
event.info = f"[{d.isoformat()}] CSSE COVID-19 daily report"
else:
event.info = f"[{d.isoformat()}] CSSE COVID-19 detailed daily report"
event.date = d
event.distribution = 3
event.add_tag('tlp:white')
if make_feed:
event.orgc = org
else:
e = misp.search(eventinfo=event.info, metadata=True, pythonify=True)
if e:
# Already added.
continue
event.add_attribute('attachment', p.name, data=BytesIO(p.open('rb').read()))
event.add_attribute('link', f'https://github.com/CSSEGISandData/COVID-19/tree/master/csse_covid_19_data/csse_covid_19_daily_reports/{p.name}', comment='Source')
if aggregate_by_country:
aggregate = defaultdict()
with p.open() as f:
reader = DictReader(f)
for row in reader:
if aggregate_by_country:
country_aggregate(aggregate, row)
else:
obj = MISPObject(name='covid19-csse-daily-report')
add_detailed_object(obj, row)
event.add_object(obj)
if aggregate_by_country:
for country, values in aggregate.items():
obj = event.add_object(name='covid19-csse-daily-report', standalone=False)
obj.add_attribute('country-region', country)
obj.add_attribute('update', values['update'])
obj.add_attribute('confirmed', values['confirmed'])
obj.add_attribute('death', values['death'])
obj.add_attribute('recovered', values['recovered'])
obj.add_attribute('active', values['active'])
if make_feed:
with (Path('output') / f'{event.uuid}.json').open('w') as _w:
json.dump(event.to_feed(), _w)
else:
event = misp.add_event(event)
misp.publish(event)
if make_feed:
feed_meta_generator(Path('output'))