This is a repository dedicated for the code used to obtain the results reported in the paper: Validation of HER2 status in whole genome sequencing data of breast cancers with AI-driven, ploidy-corrected approach.
The main results can be found in the readme report while all the details of the analysis with the code allowing to reproduce all of our results can be found in the notebooks.
We aim to gather the feedback about the input data and the outcome received by other researchers using our tool. We have added a kind request to notify us about any such results and included a short feedback questionnaire as a form of a peer review.