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conda package for MPAS tools #248

Merged
merged 27 commits into from
May 9, 2019
Merged

conda package for MPAS tools #248

merged 27 commits into from
May 9, 2019

Commits on May 9, 2019

  1. Fix print statements for python 3

    @xylar
    xylar committed May 9, 2019
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  2. Fix PEP8 formatting of coastline alteration scripts

    @xylar
    xylar committed May 9, 2019
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  3. Move conda recipe to mesh_tools

    @xylar
    xylar committed May 9, 2019
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  4. Add LICENSE file

    @xylar
    xylar committed May 9, 2019
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  5. Add mpas_mesh_tools python package 

    Includes planar_hex
    @xylar
    xylar committed May 9, 2019
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  6. Fix is_periodic if both --npx and --npy are used

    @xylar
    xylar committed May 9, 2019
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  7. Update conda recipe to include mpas_mesh_tools package

    @xylar
    xylar committed May 9, 2019
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  8. Update setup.py and conda recipe

    @xylar
    xylar committed May 9, 2019
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  9. Fix PEP8 formatting on mark_horns_for_culling.py

    @xylar
    xylar committed May 9, 2019
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  10. Update the recipe to move land ice mesh tools 

    This is better than moving them in the repo.
    @xylar
    xylar committed May 9, 2019
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  11. Add translate and io to mpas_mesh_tools

    @xylar
    xylar committed May 9, 2019
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  12. Fix the conda recipe

    @xylar
    xylar committed May 9, 2019
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  13. Add more scripts needed for COMPASS

    @xylar
    xylar committed May 9, 2019
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  14. Add python function to interface with mesh conversion tools 

    These functions are expected to make it simpler to make use of
these tools within a pythonn workflow such as COMPASS where the
user is working with xarray.Dataset and
geometric_features.FeatureCollection objects instead of file names.
    @xylar
    xylar committed May 9, 2019
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  15. Update gitignore to ignore many more unwanted files/dirs 

    These include python cache directories as well as many, many other
temporary, cache or config files that we might encounter.
    @xylar
    xylar committed May 9, 2019
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  16. Add a starting point for MPAS mesh-tool documentation

    @xylar
    xylar committed May 9, 2019
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  17. Move mpas_mesh_tools up a directory 

    Too many scripts are needed from elsewhere in the repo
    @xylar
    xylar committed May 9, 2019
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  18. Add the paraview extractor to mpas_mesh_tools

    @xylar
    xylar committed May 9, 2019
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  19. Rename mpas_mesh_tools to just mpas_tools 

    It's too confusing to have mpas_mesh_tools next to mesh_tools.
Plus, the package is pulling in scripts from throughout the repo,
not just mesh tools.
    @xylar
    xylar committed May 9, 2019
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  20. Update 2 coastal-alteration tools to be functions 

    The functions are in mpas_tools.ocean.coastline_alteration.
The scripts in ocean/coastline_alteration still work the same as
before by calling the functions.
    @xylar
    xylar committed May 9, 2019
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  21. Switch conversion to using a temp directory 

    This should prevent mistakes where files from other processes
are accidentally retained (e.g. graph.info vs culled_graph.info)
    @xylar
    xylar committed May 9, 2019
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  22. Add option to set NetCDF format 

    The default is 'NETCDF3_64BIT' for MPAS compatibility.
    @xylar
    xylar committed May 9, 2019
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  23. Move mpas_tools package into conda_package 

    This will hopefully avoid confusion with tools outside the
package
    @xylar
    xylar committed May 9, 2019
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  24. Make add_land_locked_cells_to_mask a function 

    Made the looping more efficient.  Currently, still uses NetCDF4
instead of xarray.
    @xylar
    xylar committed May 9, 2019
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  25. Change add_land_locked_cells_to_mask to use xarray

    @xylar
    xylar committed May 9, 2019
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  26. Add test for non-periodic planar-hex meshes

    @xylar
    xylar committed May 9, 2019
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  27. Add support for lists of masks for the conda-package cell culler

    @xylar
    xylar committed May 9, 2019
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