CBU AA 5.4.0, March 2019
Informal CBU release - to ease reproducibility and data sharing, we make releases whenever the deployed version on the CBU imaging system changes.
This version is largely a bug fix release, which addresses issues with the previous version that was deployed at CBU (commit cc2e390, stored under /imaging/local/software/AA/release-5.4.0_201809 on the CBU imaging system):
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Fix bugs with CSH-based shells.
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Changed stream naming in DKI / DTI modules for consistency - the old 'normalised_grey' and 'native_grey' streams are now just one 'grey' stream. This makes AA more composable - you can work in native or MNI template space as you wish by renaming this stream appropriately.
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aas_export_toBIDS is now much more flexible with e.g. first-level model export
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aamod_firstlevel_threshold and aamod_secondlevel_threshold now support flexible overlays and templates