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  1. HepatocyteClonalDynamics HepatocyteClonalDynamics Public

    Simulating spatial dynamics of homeostatic renewal in the hepatic lobule.

    C++ 1

  2. liverMitoDNAPipeline liverMitoDNAPipeline Public

    Snakemake pipeline for calling somatic mtDNA single nucleotide variants, used in Passman et al 2021

    Python

  3. CancerSubclonalPatterns CancerSubclonalPatterns Public

    Lattice based 2D spatial modelling of subclonal evolution in cancer

    C++ 1

  4. spatial_ecDNA_patterns spatial_ecDNA_patterns Public

    Simulations of spatial patterns of ecDNA content in expanding tumour cell populations

    C++