Pyramidal

Whole hippocampi were obtained surgically as from individual mice treated with EPO and Placebo controls. We did stick to the standard parameters of sample preparation for single nuclei sequencing. Single nuclei libraries were constructed using the Chromium Single Cell 3’Reagent Kits (v6) according to manufacturer instructions. Single nuclei sequencing data is available under the GEO accession….

Name		Name	Last commit message	Last commit date
Latest commit History 22 Commits
Annotating harmonised data		Annotating harmonised data
Average expression one celltype at once		Average expression one celltype at once
Clusters of Pyramidal lineages		Clusters of Pyramidal lineages
DEGs from Pseudobulk scRNA-seq		DEGs from Pseudobulk scRNA-seq
Differential expression violinplots jittered boxplots		Differential expression violinplots jittered boxplots
Harmony Integration		Harmony Integration
Merging, and removing unwanted cells		Merging, and removing unwanted cells
Processing of snRNA-seq datasets for EPO and Placebo samples		Processing of snRNA-seq datasets for EPO and Placebo samples
README.md		README.md
Regulons EPO vs Placebo		Regulons EPO vs Placebo
VlnPlots_Heatmap_Bootstrapping plots		VlnPlots_Heatmap_Bootstrapping plots
averaged celltypes		averaged celltypes
barplots_individual genes		barplots_individual genes
bootstrapping clustering analysis		bootstrapping clustering analysis
obtaining ten clusters		obtaining ten clusters
proportion of celltypes		proportion of celltypes
proportion_plots_pyramidal		proportion_plots_pyramidal
slingshot		slingshot

Manu-1512/Erythropoetin-says-Dracarys

Folders and files

Latest commit

History

Repository files navigation

Pyramidal

About

Resources

Stars

Watchers

Forks