dialing in navigation to contributions & best practices with new inde…

…x landing page
MarineOmics · Mar 24, 2023 · e30566c · e30566c
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diff --git a/ADMIN_01_submissions_instructions.html b/ADMIN_01_submissions_instructions.html
@@ -348,7 +348,22 @@
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
-  <a href="DRAFT_04_best_principles.html">Best Principles</a>
+  <a href="ADMIN_04_best_principles.html">Best Principles</a>
+</li>
+<li class="dropdown">
+  <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
+    Contributions
+
+    <span class="caret"></span>
+  </a>
+  <ul class="dropdown-menu" role="menu">
+    <li>
+      <a href="ADMIN_01_submissions_instructions.html">Guide for Building a Page</a>
+    </li>
+    <li>
+      <a href="ADMIN_02_contributions.html">Past and Current Contributors</a>
+    </li>
+  </ul>
 </li>
 <li class="dropdown">
   <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">

diff --git a/ADMIN_02_contributions.Rmd b/ADMIN_02_contributions.Rmd
@@ -1,4 +1,8 @@
 ---
+hide:
+  - navigation
+---
+---
 title: "Contributions"
 ---
 

diff --git a/ADMIN_02_contributions.html b/ADMIN_02_contributions.html
@@ -326,7 +326,22 @@
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
-  <a href="DRAFT_04_best_principles.html">Best Principles</a>
+  <a href="ADMIN_04_best_principles.html">Best Principles</a>
+</li>
+<li class="dropdown">
+  <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
+    Contributions
+
+    <span class="caret"></span>
+  </a>
+  <ul class="dropdown-menu" role="menu">
+    <li>
+      <a href="ADMIN_01_submissions_instructions.html">Guide for Building a Page</a>
+    </li>
+    <li>
+      <a href="ADMIN_02_contributions.html">Past and Current Contributors</a>
+    </li>
+  </ul>
 </li>
 <li class="dropdown">
   <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">

diff --git a/ADMIN_03_panels.html b/ADMIN_03_panels.html
@@ -326,7 +326,22 @@
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
-  <a href="DRAFT_04_best_principles.html">Best Principles</a>
+  <a href="ADMIN_04_best_principles.html">Best Principles</a>
+</li>
+<li class="dropdown">
+  <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
+    Contributions
+
+    <span class="caret"></span>
+  </a>
+  <ul class="dropdown-menu" role="menu">
+    <li>
+      <a href="ADMIN_01_submissions_instructions.html">Guide for Building a Page</a>
+    </li>
+    <li>
+      <a href="ADMIN_02_contributions.html">Past and Current Contributors</a>
+    </li>
+  </ul>
 </li>
 <li class="dropdown">
   <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">

diff --git a/DRAFT_04_best_principles.Rmd → ADMIN_04_best_principles.Rmd b/DRAFT_04_best_principles.Rmd → ADMIN_04_best_principles.Rmd
@@ -1,6 +1,6 @@
 ---
 title: "Best Principles in Genomics Research"
-bibliography: "DRAFT_04_best_principles_files/common-bib_01.bib"
+bibliography: "ADMIN_04_best_principles_files/common-bib_01.bib"
 _disableToc: true
 editor_options: 
   markdown: 

diff --git a/DRAFT_04_best_principles.html → ADMIN_04_best_principles.html b/DRAFT_04_best_principles.html → ADMIN_04_best_principles.html
@@ -348,7 +348,22 @@
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
-  <a href="DRAFT_04_best_principles.html">Best Principles</a>
+  <a href="ADMIN_04_best_principles.html">Best Principles</a>
+</li>
+<li class="dropdown">
+  <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
+    Contributions
+
+    <span class="caret"></span>
+  </a>
+  <ul class="dropdown-menu" role="menu">
+    <li>
+      <a href="ADMIN_01_submissions_instructions.html">Guide for Building a Page</a>
+    </li>
+    <li>
+      <a href="ADMIN_02_contributions.html">Past and Current Contributors</a>
+    </li>
+  </ul>
 </li>
 <li class="dropdown">
   <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">

diff --git a/DRAFT_04_best_principles_files/.DS_Store → ADMIN_04_best_principles_files/.DS_Store b/DRAFT_04_best_principles_files/.DS_Store → ADMIN_04_best_principles_files/.DS_Store
diff --git a/...4_best_principles_files/common-bib_01.bib → ...4_best_principles_files/common-bib_01.bib b/...4_best_principles_files/common-bib_01.bib → ...4_best_principles_files/common-bib_01.bib
diff --git a/DRAFT_DNA_methylation.html b/DRAFT_DNA_methylation.html
@@ -348,7 +348,22 @@
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
-  <a href="DRAFT_04_best_principles.html">Best Principles</a>
+  <a href="ADMIN_04_best_principles.html">Best Principles</a>
+</li>
+<li class="dropdown">
+  <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
+    Contributions
+
+    <span class="caret"></span>
+  </a>
+  <ul class="dropdown-menu" role="menu">
+    <li>
+      <a href="ADMIN_01_submissions_instructions.html">Guide for Building a Page</a>
+    </li>
+    <li>
+      <a href="ADMIN_02_contributions.html">Past and Current Contributors</a>
+    </li>
+  </ul>
 </li>
 <li class="dropdown">
   <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">

diff --git a/DRAFT_Funct_Enrich.Rmd b/DRAFT_Funct_Enrich.Rmd
@@ -134,7 +134,7 @@ library(tidyverse)
 
 # Run GOMWU and Fisher's exact tests on data of interest (see https://github.com/z0on/GO_MWU)
 
-```{r, include = TRUE}
+```{r, include = TRUE, eval=F}
 
 # GO enrichments using Mann Whitney U tests
 setwd("GO_MWU-master/")

diff --git a/DRAFT_Funct_Enrich.html b/DRAFT_Funct_Enrich.html
@@ -348,7 +348,22 @@
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
-  <a href="DRAFT_04_best_principles.html">Best Principles</a>
+  <a href="ADMIN_04_best_principles.html">Best Principles</a>
+</li>
+<li class="dropdown">
+  <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
+    Contributions
+
+    <span class="caret"></span>
+  </a>
+  <ul class="dropdown-menu" role="menu">
+    <li>
+      <a href="ADMIN_01_submissions_instructions.html">Guide for Building a Page</a>
+    </li>
+    <li>
+      <a href="ADMIN_02_contributions.html">Past and Current Contributors</a>
+    </li>
+  </ul>
 </li>
 <li class="dropdown">
   <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">

diff --git a/FUN_01_DGE_comparison_v2.html b/FUN_01_DGE_comparison_v2.html
@@ -348,7 +348,22 @@
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
-  <a href="DRAFT_04_best_principles.html">Best Principles</a>
+  <a href="ADMIN_04_best_principles.html">Best Principles</a>
+</li>
+<li class="dropdown">
+  <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
+    Contributions
+
+    <span class="caret"></span>
+  </a>
+  <ul class="dropdown-menu" role="menu">
+    <li>
+      <a href="ADMIN_01_submissions_instructions.html">Guide for Building a Page</a>
+    </li>
+    <li>
+      <a href="ADMIN_02_contributions.html">Past and Current Contributors</a>
+    </li>
+  </ul>
 </li>
 <li class="dropdown">
   <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">

diff --git a/POP_01_choosing_population_genetics.html b/POP_01_choosing_population_genetics.html
@@ -350,7 +350,22 @@
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
-  <a href="DRAFT_04_best_principles.html">Best Principles</a>
+  <a href="ADMIN_04_best_principles.html">Best Principles</a>
+</li>
+<li class="dropdown">
+  <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
+    Contributions
+
+    <span class="caret"></span>
+  </a>
+  <ul class="dropdown-menu" role="menu">
+    <li>
+      <a href="ADMIN_01_submissions_instructions.html">Guide for Building a Page</a>
+    </li>
+    <li>
+      <a href="ADMIN_02_contributions.html">Past and Current Contributors</a>
+    </li>
+  </ul>
 </li>
 <li class="dropdown">
   <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">

diff --git a/POP_02_RADseq.html b/POP_02_RADseq.html
@@ -348,7 +348,22 @@
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
-  <a href="DRAFT_04_best_principles.html">Best Principles</a>
+  <a href="ADMIN_04_best_principles.html">Best Principles</a>
+</li>
+<li class="dropdown">
+  <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
+    Contributions
+
+    <span class="caret"></span>
+  </a>
+  <ul class="dropdown-menu" role="menu">
+    <li>
+      <a href="ADMIN_01_submissions_instructions.html">Guide for Building a Page</a>
+    </li>
+    <li>
+      <a href="ADMIN_02_contributions.html">Past and Current Contributors</a>
+    </li>
+  </ul>
 </li>
 <li class="dropdown">
   <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">

diff --git a/POP_03_poolseq.html b/POP_03_poolseq.html
@@ -348,7 +348,22 @@
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
-  <a href="DRAFT_04_best_principles.html">Best Principles</a>
+  <a href="ADMIN_04_best_principles.html">Best Principles</a>
+</li>
+<li class="dropdown">
+  <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
+    Contributions
+
+    <span class="caret"></span>
+  </a>
+  <ul class="dropdown-menu" role="menu">
+    <li>
+      <a href="ADMIN_01_submissions_instructions.html">Guide for Building a Page</a>
+    </li>
+    <li>
+      <a href="ADMIN_02_contributions.html">Past and Current Contributors</a>
+    </li>
+  </ul>
 </li>
 <li class="dropdown">
   <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">

diff --git a/POP_04_WGS_intro.html b/POP_04_WGS_intro.html
@@ -348,7 +348,22 @@
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
-  <a href="DRAFT_04_best_principles.html">Best Principles</a>
+  <a href="ADMIN_04_best_principles.html">Best Principles</a>
+</li>
+<li class="dropdown">
+  <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
+    Contributions
+
+    <span class="caret"></span>
+  </a>
+  <ul class="dropdown-menu" role="menu">
+    <li>
+      <a href="ADMIN_01_submissions_instructions.html">Guide for Building a Page</a>
+    </li>
+    <li>
+      <a href="ADMIN_02_contributions.html">Past and Current Contributors</a>
+    </li>
+  </ul>
 </li>
 <li class="dropdown">
   <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">

diff --git a/POP_05_RDAtraitPredictionTutorial.html b/POP_05_RDAtraitPredictionTutorial.html
@@ -330,7 +330,22 @@
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
-  <a href="DRAFT_04_best_principles.html">Best Principles</a>
+  <a href="ADMIN_04_best_principles.html">Best Principles</a>
+</li>
+<li class="dropdown">
+  <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
+    Contributions
+
+    <span class="caret"></span>
+  </a>
+  <ul class="dropdown-menu" role="menu">
+    <li>
+      <a href="ADMIN_01_submissions_instructions.html">Guide for Building a Page</a>
+    </li>
+    <li>
+      <a href="ADMIN_02_contributions.html">Past and Current Contributors</a>
+    </li>
+  </ul>
 </li>
 <li class="dropdown">
   <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">

diff --git a/POP_06_fastq2vcf_june2022_update.html b/POP_06_fastq2vcf_june2022_update.html
@@ -327,7 +327,22 @@
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
-  <a href="DRAFT_04_best_principles.html">Best Principles</a>
+  <a href="ADMIN_04_best_principles.html">Best Principles</a>
+</li>
+<li class="dropdown">
+  <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
+    Contributions
+
+    <span class="caret"></span>
+  </a>
+  <ul class="dropdown-menu" role="menu">
+    <li>
+      <a href="ADMIN_01_submissions_instructions.html">Guide for Building a Page</a>
+    </li>
+    <li>
+      <a href="ADMIN_02_contributions.html">Past and Current Contributors</a>
+    </li>
+  </ul>
 </li>
 <li class="dropdown">
   <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">

diff --git a/POP_06_fastq2vcf_pipeline.html b/POP_06_fastq2vcf_pipeline.html
@@ -327,7 +327,22 @@
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
-  <a href="DRAFT_04_best_principles.html">Best Principles</a>
+  <a href="ADMIN_04_best_principles.html">Best Principles</a>
+</li>
+<li class="dropdown">
+  <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
+    Contributions
+
+    <span class="caret"></span>
+  </a>
+  <ul class="dropdown-menu" role="menu">
+    <li>
+      <a href="ADMIN_01_submissions_instructions.html">Guide for Building a Page</a>
+    </li>
+    <li>
+      <a href="ADMIN_02_contributions.html">Past and Current Contributors</a>
+    </li>
+  </ul>
 </li>
 <li class="dropdown">
   <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">

diff --git a/POP_07_WGS_Full_Walkthrough.html b/POP_07_WGS_Full_Walkthrough.html
@@ -326,7 +326,22 @@
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
-  <a href="DRAFT_04_best_principles.html">Best Principles</a>
+  <a href="ADMIN_04_best_principles.html">Best Principles</a>
+</li>
+<li class="dropdown">
+  <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
+    Contributions
+
+    <span class="caret"></span>
+  </a>
+  <ul class="dropdown-menu" role="menu">
+    <li>
+      <a href="ADMIN_01_submissions_instructions.html">Guide for Building a Page</a>
+    </li>
+    <li>
+      <a href="ADMIN_02_contributions.html">Past and Current Contributors</a>
+    </li>
+  </ul>
 </li>
 <li class="dropdown">
   <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">