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Self load data #212

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merged 7 commits into from Mar 5, 2020
Merged

Self load data #212

merged 7 commits into from Mar 5, 2020

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shyamd
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@shyamd shyamd commented Mar 5, 2020

This PR loads data in the data module rather than doing this in the main code. This helps to ensure the separation of concerns.

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codecov bot commented Mar 5, 2020

Codecov Report

Merging #212 into master will increase coverage by 0.02%.
The diff coverage is n/a.

Impacted file tree graph

@@            Coverage Diff             @@
##           master     #212      +/-   ##
==========================================
+ Coverage   87.06%   87.08%   +0.02%     
==========================================
  Files          41       42       +1     
  Lines        1879     1882       +3     
==========================================
+ Hits         1636     1639       +3     
  Misses        243      243              
Flag Coverage Δ
#unittests 87.08% <100.00%> (+0.02%) ⬆️
Impacted Files Coverage Δ
optimade/server/data/__init__.py 100.00% <0.00%> (ø)

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Looks good to me, thanks @shyamd !

Even got rid of the extra superfluous dumps 👍

Will let @ml-evs approve, considering the way he uses this package and whether this rewrite works for his own implementation.

@CasperWA CasperWA requested a review from ml-evs March 5, 2020 16:24
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This looks useful, thanks @shyamd! No requested changes from me.

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ml-evs commented Mar 5, 2020

Something strange is happening with GH actions at the moment (the test that itself pulls an action is just hanging and can't be cancelled). If this turns green at some point, feel free to squash merge (anyone).

@shyamd shyamd merged commit a813682 into Materials-Consortia:master Mar 5, 2020
@shyamd shyamd deleted the self-load-data branch March 5, 2020 18:05
@CasperWA CasperWA mentioned this pull request Mar 6, 2020
CasperWA added a commit that referenced this pull request Mar 6, 2020
Up to v0.6.0.

**New features**:
- GitHub Action validator that runs `optimade_validator` for a locally running OPTiMaDe server (#191, @CasperWA, tested by @ml-evs)
- Support filter queries for `HAS ALL`, `HAS ANY` and `HAS ONLY` and value lists on MongoDB backends (#173, @ml-evs)
  Note: `OPERATOR` use in value lists are still _not_ supported.
- Debug mode. Start the server in debug mode to enable `debug` log-level in `uvicorn` and get a full Python traceback in the JSON response (#190, @CasperWA)
- Add testing of mandatory `filter` queries to `optimade_validator` (#205, @ml-evs)

**Updates**:
- Allow Cross-Origin requests from anywhere (`*`), i.e., enable CORS for both servers (#194, @CasperWA)
- Updates to models (correct misspelling, more transparent model class naming, streamline models with respect to python class inheritance, update field descriptions) (#195, @CasperWA)
- API change: Rename `optimade.models.toplevel.py` to `optimade.models.responses.py` (#195, @CasperWA)
- Update dependencies to newest versions (as of 02.03.2020) (#202, #196, @CasperWA)
- Move imports from `starlette` to `fastapi`, where possible (#202, @ml-evs)
- Remove custom middleware to redirect slashed URLs in favor of `starlette` implementation (#202, @ml-evs)
- CI tests are now performed with a real MongoDB in the backend. CI tests are also performed with a `mongomock` backend for the tests in `server/test_middleware.py`, `server/test_server_validation.py`, and `server/test_config.py` (#196, @ml-evs, additional testing by @CasperWA )
- Remove `/optimade` from base URLs. This was especially important for the OpenAPI schema (#201, #216, @CasperWA, @ml-evs)
- Check integrity of query part of the raw URL using a custom middleware (#209, @CasperWA)
- New `optimade/server/exceptions.py` to contain custom `HttpException`s, moved `BadRequest` here (#209, @CasperWA)
- Pattern and regex testing for `data.available_api_versions` parts in `/info` endpoint and fix tests for the same (#211, @CasperWA)
- Restructure import of test data for regular server (#212, @shyamd)

**Bug fixes**:
- New retrieval URL for Materials-Consortia's list of providers (#187, @CasperWA)
- Skip local `HAS ONLY` tests with a `mongomock` backend, since v3.19.0 does not support these (#206, @ml-evs)
- Resource ID's can now contain slashes (`/`) (#183, @ml-evs, @CasperWA)
- Remove _valid_ version part of base URL in `meta.query.representation` (#201, @CasperWA)
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3 participants