This repository provides a bioinformatics pipeline for processing the 3'-seq data of Sommerkamp et al., Cell Stem Cell, 2020 using the mouse UTRome annotation derived from the Microwell-seq data generated by https://github.com/Mayrlab/mca-utrome. Analysis of these outputs are reported in Fansler et al., bioRxiv, 2023.
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Bioinformatics pipeline for 3'-seq data of Sommerkamp et al. 2020