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NAMESPACE
42 lines (41 loc) · 1.19 KB
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(clustering_postprocess)
export(clustering_preprocess)
export(clustering_run)
export(compute_subclonal_expansion_score)
export(compute_subclone_proportions)
export(conipher_clustering)
export(conipher_run)
export(conipher_treebuilding)
export(get_terminal_clusters)
export(treebuilding_plot)
export(treebuilding_preprocess)
export(treebuilding_run)
import(plyr)
importFrom(RColorBrewer,"brewer.pal")
importFrom(boot,"boot")
importFrom(boot,"boot.ci")
importFrom(data.table,":=")
importFrom(dplyr,"%>%")
importFrom(grDevices,"colorRampPalette")
importFrom(grDevices,"dev.off")
importFrom(grDevices,"pdf")
importFrom(graphics,"abline")
importFrom(graphics,"axis")
importFrom(graphics,"barplot")
importFrom(graphics,"layout")
importFrom(graphics,"legend")
importFrom(graphics,"par")
importFrom(graphics,"plot.new")
importFrom(graphics,"segments")
importFrom(graphics,"text")
importFrom(graphics,"title")
importFrom(igraph,"get.edgelist")
importFrom(igraph,"shortest.paths")
importFrom(parallel,mclapply)
importFrom(stats,"median")
importFrom(stats,"qnorm")
importFrom(stats,"sd")
importFrom(stats,"setNames")
importFrom(stats,"wilcox.test")
importFrom(utils,"combn")