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@McGranahanLab

McGranahanLab

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  1. TcellExTRECT TcellExTRECT Public

    R 46 20

  2. CONIPHER CONIPHER Public

    Git repo for CONIPHER tree building

    R 18 4

  3. mhc-hammer mhc-hammer Public

    Pipeline to detect HLA disruption from WES and RNAseq data

    R 13 4

  4. CONIPHER-wrapper CONIPHER-wrapper Public

    R 8 2

  5. T-cell-ExTRECT-figure-code-2021 T-cell-ExTRECT-figure-code-2021 Public

    Code used to produce figures in the paper "T cell quantification from DNA sequencing predicts immunotherapy response " by Bentham et al 2021

    R 7 3

  6. Guidebook Guidebook Public

    Shell 4 1

Repositories

Showing 10 of 21 repositories
  • mhc-hammer Public

    Pipeline to detect HLA disruption from WES and RNAseq data

    McGranahanLab/mhc-hammer’s past year of commit activity
    R 13 4 5 1 Updated Oct 3, 2024
  • CONIPHER Public

    Git repo for CONIPHER tree building

    McGranahanLab/CONIPHER’s past year of commit activity
    R 18 BSD-3-Clause 4 8 1 Updated Sep 18, 2024
  • ALPACA-paper Public
    McGranahanLab/ALPACA-paper’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Aug 2, 2024
  • Noncoding_drivers_Nextflow Public

    Nextflow pipeline for the de-novo detection of coding and noncoding cancer driver genomic elements in cohorts of cancer patients.

    McGranahanLab/Noncoding_drivers_Nextflow’s past year of commit activity
    R 0 BSD-3-Clause 0 0 0 Updated Jul 28, 2024
  • TX_data Public
    McGranahanLab/TX_data’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jun 13, 2024
  • GEL_lung_landscape_figure_code Public

    Figure code for the GEL lung landscape paper

    McGranahanLab/GEL_lung_landscape_figure_code’s past year of commit activity
    R 0 0 0 0 Updated Jun 13, 2024
  • ARTanalysis Public

    Code to recreate the Figure of the manuscript “Replication timing alterations shape the genomic and transcriptomic landscape during breast and lung cancer evolution”

    McGranahanLab/ARTanalysis’s past year of commit activity
    R 0 MIT 0 0 0 Updated May 26, 2024
  • Guidebook Public
    McGranahanLab/Guidebook’s past year of commit activity
    Shell 4 1 0 0 Updated Apr 2, 2024
  • mutect2_forceActive_behaviour Public
    McGranahanLab/mutect2_forceActive_behaviour’s past year of commit activity
    Shell 0 0 1 0 Updated Dec 20, 2023
  • bioinfcollab_cruklungcentre Public

    Bioinformatics collaboration at CRUK Lung center of excellence

    McGranahanLab/bioinfcollab_cruklungcentre’s past year of commit activity
    CSS 3 0 0 0 Updated Dec 19, 2023
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