improve output

McTavishLab · Aug 10, 2019 · 5463766 · 5463766
1 parent 2c7dc69
commit 5463766
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/physcraper/scrape.py b/physcraper/scrape.py
@@ -738,7 +738,7 @@ def filter_seqs(self, tmp_dict, threshold=5, type="random"):
         aln_sp_d = self.make_sp_dict(aln_otus)
         debug("There are {} taxa in aln".format(len(aln_sp_d)))
         alltax = set(new_sp_d.keys()).union(aln_sp_d.keys())
-        sys.stdout.write("taxa in orginal alignment; {} taxa in updated alignemnt {}, keeping max {} seq per taxon".format(len(aln_sp_d), len(alltax), threshold))
+        sys.stdout.write("taxa in orginal alignment; {} taxa in updated alignemnt {}, keeping max {} seq per taxon\n".format(len(aln_sp_d), len(alltax), threshold))
         for tax_id in new_sp_d:
             debug(" {} new seqs for taxon {}".format(len(new_sp_d[tax_id]), tax_id))
             tax_otus = []