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Update .travis.yml
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snacktavish committed Nov 12, 2019
1 parent 9de3410 commit 869c549
Showing 1 changed file with 13 additions and 12 deletions.
25 changes: 13 additions & 12 deletions .travis.yml
Original file line number Diff line number Diff line change
Expand Up @@ -12,6 +12,7 @@ install:
# install requirements of physcraper
- pip install --force-reinstall numpy==1.14.5
- pip install -r requirements.txt
- pip install configparser
- python setup.py install


Expand All @@ -29,24 +30,24 @@ install:
#- papara

##### to use RAXML we need conda
- wget http://repo.continuum.io/miniconda/Miniconda-latest-Linux-x86_64.sh -O miniconda.sh
- chmod +x miniconda.sh
- bash miniconda.sh -b -p $HOME/miniconda
- export PATH="$HOME/miniconda/bin:$PATH"
- conda config --set always_yes yes --set changeps1 no
- conda update -q conda
- conda create -q -n test-environment python=$TRAVIS_PYTHON_VERSION
- source activate test-environment
# - wget http://repo.continuum.io/miniconda/Miniconda-latest-Linux-x86_64.sh -O miniconda.sh
# - chmod +x miniconda.sh
# - bash miniconda.sh -b -p $HOME/miniconda
# - export PATH="$HOME/miniconda/bin:$PATH"
# - conda config --set always_yes yes --set changeps1 no
# - conda update -q conda
# - conda create -q -n test-environment python=$TRAVIS_PYTHON_VERSION
# - source activate test-environment
#- conda install -c bioconda raxml


#### ete fails now, because of conda
- conda install -c etetoolkit ete2
- export PATH=~/anaconda_ete/bin:$PATH
# - conda install -c etetoolkit ete2
# - export PATH=~/anaconda_ete/bin:$PATH

#### check build documentation with sphinx
- pip install sphinx
- make -C docs
# - pip install sphinx
# - make -C docs

#### needed for mpi4py which is in requirements
#- sudo apt install libopenmpi-dev
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