reomve tmpfile output

McTavishLab · Aug 8, 2019 · d3bd0f2 · d3bd0f2
1 parent f2601bb
commit d3bd0f2
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/physcraper/scrape.py b/physcraper/scrape.py
@@ -280,9 +280,9 @@ def run_blast_wrapper(self):  # TODO Should this be happening elsewhere?
             log.write("Blast run {} \n".format(datetime.date.today()))
         for taxon, seq in self.data.aln.items():
             otu_id = taxon.label
-            tmpfile = open("{}/{}.tmp".format(self.workdir, otu_id),"w")
-            tmpfile.write(seq.symbols_as_string())
-            tmpfile.write("\n")
+#            tmpfile = open("{}/{}.tmp".format(self.workdir, otu_id),"w")
+#            tmpfile.write(seq.symbols_as_string())
+#            tmpfile.write("\n")
             assert otu_id in self.data.otu_dict
             last_blast = self.data.otu_dict[otu_id]['^physcraper:last_blasted']
             if last_blast == None: