Merge pull request #43 from Carreau/restaore-cwd

Fix running multiple test with py.test
McTavishLab · Dec 1, 2018 · e5a06e6 · e5a06e6
2 parents f5d0563 + 5dfe29c
commit e5a06e6
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/physcraper/__init__.py b/physcraper/__init__.py
@@ -2474,9 +2474,11 @@ def write_unpubl_blastdb(self, path_to_local_seq):
                 count = count + 1
                 seq = seq_l[i]
                 local_blast.write_filterblast_files(self.workdir, key, seq, db=True, fn="local_unpubl_seq")
+        old_cwd = os.getcwd()
         os.chdir(os.path.join(self.workdir, "blast"))
         cmd1 = "makeblastdb -in {}_db -dbtype nucl".format("local_unpubl_seq")
         os.system(cmd1)
+        os.chdir(old_cwd)
 
 
 class FilterBlast(PhyscraperScrape):