SARS-CoV-2_Vo_genomics

In this repository the supportive information of the study "Rapid longitudinal SARS-CoV-2 intra-host emergence of novel haplotypes regardless of immune deficiencies" are prvided and listed as follows:
Figure S1: Mutations defining Vo’ haplotype in time;
Figure S2: S:L5F appeared in Iota variant in 2021;
Figure S3: ML phylogenetic tree of European lineage B SARS-CoV-2 sequences at the be-ginning of the pandemic;
Figure S4: Minimum Spanning Network of European lineage B SARS-CoV-2 sequences at the beginning of the pandemic;
Figure S5: Antibody titres of subjects positive to two sequential swab tests with an average time interval of 11 days;
Figure S6: TCR features of subjects positive to two sequential swab tests with an average time interval of 11 days;
Table S1: Vo’ non-synonymous mutations according to different clades;
Table S2: GISAID IDs and corresponding in-house labels; mutations found in Vo' haplotypes; Vo'metadata;
Video S1: Expanding network based on symptoms onset data;
GISAID acknowledgement table.