Merge pull request #9 from Medical-Event-Data-Standard/Readme-additions #31
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| name: Run tests | |
| on: | |
| push: | |
| branches: [ "main" ] | |
| pull_request: | |
| branches: [ "main" ] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.10"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install flake8 pytest | |
| - name: Install MEDS ETL | |
| run: python -m pip install . | |
| - name: Download MIMIC-IV-Demo (v2.2) | |
| run: | | |
| # Download the MIMIC-IV-Demo dataset (v2.2) to a tests/data/ directory | |
| wget -r -N -c --no-host-directories --cut-dirs=1 -np -P tests/data https://physionet.org/files/mimic-iv-demo/2.2/ | |
| - name: Run tests | |
| run: | | |
| pytest -v |