Dietary-fiber-chemical-structure-determined-gut-microbiota-dynamics

All figures and tables in the article: “Dietary Fiber Chemical Structure Determined Gut Microbiota Dynamics”

More information can be found in the online DOI (https://doi.org/10.1002/imt2.64) or iMeta Science (http://www.imeta.science/)

桑基图

Combining data in Sankey diagram.txt and code in Sankey diagram.R can obtain Figure 3

Bray_curtis距离PCoA图

Combining data in bray_curtis.csv and code in bray_curtis.R can obtain Figure S3C

科水平物种组成图

Combining data in family-speciestop30.csv, family.csv, and mapping.csv, and code in family.R can obtain Figure S3E

正交偏最小二乘法判别分析图

Combining data in oplsda.csv and code in oplsda.R can obtain Figure 4D

目水平物种组成图

Combining data in order-speciestop30.csv, order.csv, and mapping.csv, and code in order.R can obtain Figure 4E

Unweighted_unifrac距离PCoA图

Combining data in unweighted_unifrac.csv and code in unweighted_unifrac.R can obtain Figure 4C

Weighted_unifrac距离PCoA图

Combining data in weighted_unifrac.csv and code in weighted_unifrac.R can obtain Figure S3D

动态时间规整图

Combining data in Dynamic time warping.txt and code in Dynamic time warping.py can obtain the data of Figure 2K & Figure 2L

If you use these scripts, please cited: Xin Meng, Jun Zheng, Fengqiao Wang, Jie Zheng, Dong Yang. 2022. Dietary fiber chemical structure determined gut microbiota dynamics. iMeta 1: e64. https://doi.org/10.1002/imt2.64