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TransitionProbability.java
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TransitionProbability.java
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// TransistionProbability.java
//
// (c) 1999-2001 PAL Development Core Team
//
// This package may be distributed under the
// terms of the Lesser GNU General Public License (LGPL)
package pal.substmodel;
import pal.math.*;
/**
* For objects that represent a source of transition probabilities
*
* TransitionProbability.java,v 1.3 2000/08/08 22:58:29 alexi Exp $
*
* @author Matthew Goode
*/
public interface TransitionProbability extends Cloneable, java.io.Serializable {
/**
* compute transition probabilities for a expected distance
* using the prespecified rate matrix
*
* @param arc expected distance
*/
void setDistance(double arc);
/**
* compute transition probabilities for a expected time span
* using the prespecified rate matrix
*
* @param start start time
* @param end end time
*/
void setTime(double start, double end);
/**
* Returns the transition probability for changing from
* startState into endState
* @param startState - the starting state
* @param endState - the resulting state
*/
double getTransitionProbability(int startState, int endState);
int getDimension();
}