CONET is a copy number event tree inference and copy number calling bayesian procedure from whole-genome DNA sequencing data.
CONET should be used with the aid of provided Python scripts. Examples and details are provided in two notebooks:
- python/notebooks/biological_data/biological_data.ipynb
- python/notebooks/synthetic_data/synthetic_data.ipynb
- C++ compiler that supports C++14 standard
- Python 3.0 or higher
- GNU Make
- R 4.0 or higher (for output plotting)
git clone https://github.com/tc360950/CONET.git # Clone the repository
cd CONET/src
make # Build the executablescd python/conet
pip install .