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wrong option names used in help text
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MikkelSchubert committed Jun 13, 2023
1 parent 6497690 commit caf014d
Showing 1 changed file with 6 additions and 6 deletions.
12 changes: 6 additions & 6 deletions src/userconfig.cpp
Expand Up @@ -764,19 +764,19 @@ userconfig::userconfig()
.bind_double(&trim_mott_rate)
.with_default(0.05);
argparser.add("--trim-windows", "X")
.help("Specifies the size of the window used for --trimming-strategy "
"'window': If >= 1, this value will be used as the window size; if "
"the value is < 1, window size is the read lenght times this value. "
"If the resulting window size is 0 or larger than the read length, "
"the read length is used as the window size")
.help("Specifies the size of the window used for --trim-strategy 'window': "
"If >= 1, this value will be used as the window size; if the value "
"is < 1, window size is the read lenght times this value. If the "
"resulting window size is 0 or larger than the read length, the read "
"length is used as the window size")
.deprecated_alias("--trimwindows")
.conflicts_with("--trim-mott-rate")
.conflicts_with("--trim-qualities")
.bind_double(&trim_window_length)
.with_default(0.1);
argparser.add("--trim-min-quality", "N")
.help("Inclusive minimum quality used when trimming low-quality bases with "
"--trimming-strategy 'window' and 'per-base'")
"--trim-strategy 'window' and 'per-base'")
.deprecated_alias("--minquality")
.conflicts_with("--trim-mott-rate")
.bind_uint(&trim_quality_score)
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