Using CUDA to accelerate motif-finding procedure
CUDA environment: CUDA 11.3
This is a parallel version of motif finding algorithm by Gibbs sampling. The serial version is based on this one https://viralfsharp.com/2015/05/17/motif-finding-with-gibbs-sampling-f/.
There are some related paper here:
CUDA–MEME: Accelerating motif discovery in biological sequences using CUDA-enabled graphics processing units
GPU-accelerated Gibbs sampling: a case study of the Horseshoe Probit model
Data Source: