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Trouble with install on ubuntu #2

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dmcglinn opened this issue Sep 12, 2016 · 1 comment
Closed

Trouble with install on ubuntu #2

dmcglinn opened this issue Sep 12, 2016 · 1 comment
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@dmcglinn
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Here are the system details

R.version
               _                           
platform       x86_64-pc-linux-gnu         
arch           x86_64                      
os             linux-gnu                   
system         x86_64, linux-gnu           
status                                     
major          3                           
minor          2.3                         
year           2015                        
month          12                          
day            10                          
svn rev        69752                       
language       R                           
version.string R version 3.2.3 (2015-12-10)
nickname       Wooden Christmas-Tree

I have successfully installed Rcpp. Here is the R install code and resulting error. @rueuntal I think I remember you having some trouble on install as well. Was it something similar?

library(devtools)
install_github('MoBiodiv/MoBspatial')
Downloading GitHub repo MoBiodiv/MoBspatial@master
Installing MoBspatial
'/usr/lib/R/bin/R' --no-site-file --no-environ --no-save --no-restore CMD  \
  INSTALL '/tmp/Rtmp1pDqNX/devtoolse4e454eda54c/MoBiodiv-MoBspatial-4bd41e1'  \
  --library='/home/mcglinnd/R/x86_64-pc-linux-gnu-library/3.2' --install-tests 

* installing *source* package ‘MoBspatial’ ...
** libs
g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o MoBspatial.so RcppExports.o SAC_spatial.o rThomas_rcpp.o -L/usr/lib/R/lib -lR
collect2: error: ld terminated with signal 11 [Segmentation fault], core dumped
RcppExports.o:RcppExports.cpp:(.text.startup+0xf): undefined reference to `std::ios_base::Init::Init()'
RcppExports.o:RcppExports.cpp:(.text.startup+0x33): undefined reference to `std::ios_base::ios_base()'
RcppExports.o:RcppExports.cpp:(.text.startup+0x94): undefined reference to `operator new(unsigned long long)'
RcppExports.o:RcppExports.cpp:(.text.startup+0xde): undefined reference to `std::locale::locale()'
RcppExports.o:RcppExports.cpp:(.text.startup+0x113): undefined reference to `std::basic_ios<char, std::char_traits<char> >::init(std::basic_streambuf<char, std::char_traits<char> >*)'
RcppExports.o:RcppExports.cpp:(.text.startup+0x155): undefined reference to `std::ios_base::ios_base()'
RcppExports.o:RcppExports.cpp:(.text.startup+0x1af): undefined reference to `operator new(unsigned long long)'
RcppExports.o:RcppExports.cpp:(.text.startup+0x1f2): undefined reference to `std::locale::locale()'
RcppExports.o:RcppExports.cpp:(.text.startup+0x227): undefined reference to `std::basic_ios<char, std::char_traits<char> >::init(std::basic_streambuf<char, std::char_traits<char> >*)'
RcppExports.o:RcppExports.cpp:(.text.startup+0x27e): undefined reference to `std::ios_base::~ios_base()'
RcppExports.o:RcppExports.cpp:(.text.startup+0x286): undefined reference to `_Unwind_Resume'
RcppExports.o:RcppExports.cpp:(.text.startup+0x2a0): undefined reference to `std::ios_base::~ios_base()'
RcppExports.o:RcppExports.cpp:(.text.startup+0x2a8): undefined reference to `_Unwind_Resume'
SAC_spatial.o:SAC_spatial.cpp:(.text.startup+0xf): undefined reference to `std::ios_base::Init::Init()'
SAC_spatial.o:SAC_spatial.cpp:(.text.startup+0x33): undefined reference to `std::ios_base::ios_base()'
SAC_spatial.o:SAC_spatial.cpp:(.text.startup+0x3a): relocation truncated to fit: R_X86_64_PC32 against `.refptr._ZTVSt9basic_iosIcSt11char_traitsIcEE'
SAC_spatial.o:SAC_spatial.cpp:(.text.startup+0x94): undefined reference to `operator new(unsigned long long)'
SAC_spatial.o:SAC_spatial.cpp:(.text.startup+0x9b): relocation truncated to fit: R_X86_64_PC32 against `.refptr._ZTVSt15basic_streambufIcSt11char_traitsIcEE'
SAC_spatial.o:SAC_spatial.cpp:(.text.startup+0xde): undefined reference to `std::locale::locale()'
SAC_spatial.o:SAC_spatial.cpp:(.text.startup+0xe5): relocation truncated to fit: R_X86_64_PC32 against `vtable for Rcpp::Rstreambuf<true>'
SAC_spatial.o:SAC_spatial.cpp:(.text.startup+0xf2): relocation truncated to fit: R_X86_64_PC32 against `construction vtable for std::ostream-in-Rcpp::Rostream<true>'
SAC_spatial.o:SAC_spatial.cpp:(.text.startup+0x107): relocation truncated to fit: R_X86_64_PC32 against `construction vtable for std::ostream-in-Rcpp::Rostream<true>'
SAC_spatial.o:SAC_spatial.cpp:(.text.startup+0x113): undefined reference to `std::basic_ios<char, std::char_traits<char> >::init(std::basic_streambuf<char, std::char_traits<char> >*)'
SAC_spatial.o:SAC_spatial.cpp:(.text.startup+0x11a): relocation truncated to fit: R_X86_64_PC32 against `vtable for Rcpp::Rostream<true>'
SAC_spatial.o:SAC_spatial.cpp:(.text.startup+0x128): relocation truncated to fit: R_X86_64_PC32 against `vtable for Rcpp::Rostream<true>'
SAC_spatial.o:SAC_spatial.cpp:(.text.startup+0x155): undefined reference to `std::ios_base::ios_base()'
SAC_spatial.o:SAC_spatial.cpp:(.text.startup+0x1af): undefined reference to `operator new(unsigned long long)'
SAC_spatial.o:SAC_spatial.cpp:(.text.startup+0x1f2): undefined reference to `std::locale::locale()'
SAC_spatial.o:SAC_spatial.cpp:(.text.startup+0x1f9): relocation truncated to fit: R_X86_64_PC32 against `vtable for Rcpp::Rstreambuf<false>'
SAC_spatial.o:SAC_spatial.cpp:(.text.startup+0x206): relocation truncated to fit: R_X86_64_PC32 against `construction vtable for std::ostream-in-Rcpp::Rostream<false>'
SAC_spatial.o:SAC_spatial.cpp:(.text.startup+0x21b): relocation truncated to fit: R_X86_64_PC32 against `construction vtable for std::ostream-in-Rcpp::Rostream<false>'
SAC_spatial.o:SAC_spatial.cpp:(.text.startup+0x227): undefined reference to `std::basic_ios<char, std::char_traits<char> >::init(std::basic_streambuf<char, std::char_traits<char> >*)'
SAC_spatial.o:SAC_spatial.cpp:(.text.startup+0x22e): additional relocation overflows omitted from the output
SAC_spatial.o:SAC_spatial.cpp:(.text.startup+0x27e): undefined reference to `std::ios_base::~ios_base()'
SAC_spatial.o:SAC_spatial.cpp:(.text.startup+0x286): undefined reference to `_Unwind_Resume'
SAC_spatial.o:SAC_spatial.cpp:(.text.startup+0x2a0): undefined reference to `std::ios_base::~ios_base()'
SAC_spatial.o:SAC_spatial.cpp:(.text.startup+0x2a8): undefined reference to `_Unwind_Resume'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text.startup+0xf): undefined reference to `std::ios_base::Init::Init()'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text.startup+0x33): undefined reference to `std::ios_base::ios_base()'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text.startup+0x94): undefined reference to `operator new(unsigned long long)'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text.startup+0xde): undefined reference to `std::locale::locale()'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text.startup+0x113): undefined reference to `std::basic_ios<char, std::char_traits<char> >::init(std::basic_streambuf<char, std::char_traits<char> >*)'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text.startup+0x155): undefined reference to `std::ios_base::ios_base()'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text.startup+0x1af): undefined reference to `operator new(unsigned long long)'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text.startup+0x1f2): undefined reference to `std::locale::locale()'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text.startup+0x227): undefined reference to `std::basic_ios<char, std::char_traits<char> >::init(std::basic_streambuf<char, std::char_traits<char> >*)'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text.startup+0x27e): undefined reference to `std::ios_base::~ios_base()'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text.startup+0x286): undefined reference to `_Unwind_Resume'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text.startup+0x2a0): undefined reference to `std::ios_base::~ios_base()'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text.startup+0x2a8): undefined reference to `_Unwind_Resume'
RcppExports.o:RcppExports.cpp:(.text+0x9e): undefined reference to `std::ios_base::~ios_base()'
RcppExports.o:RcppExports.cpp:(.text+0xa6): undefined reference to `_Unwind_Resume'
RcppExports.o:RcppExports.cpp:(.text+0x12e): undefined reference to `std::ios_base::~ios_base()'
RcppExports.o:RcppExports.cpp:(.text+0x136): undefined reference to `_Unwind_Resume'
RcppExports.o:RcppExports.cpp:(.text+0x14b): undefined reference to `__imp_R_NilValue'
RcppExports.o:RcppExports.cpp:(.text+0x172): undefined reference to `Rf_isNull'
RcppExports.o:RcppExports.cpp:(.text+0x187): undefined reference to `R_PreserveObject'
RcppExports.o:RcppExports.cpp:(.text+0x1a1): undefined reference to `__cxa_guard_acquire'
RcppExports.o:RcppExports.cpp:(.text+0x1d7): undefined reference to `Rf_isNull'
RcppExports.o:RcppExports.cpp:(.text+0x1ec): undefined reference to `R_PreserveObject'
RcppExports.o:RcppExports.cpp:(.text+0x204): undefined reference to `__cxa_guard_acquire'
RcppExports.o:RcppExports.cpp:(.text+0x226): undefined reference to `R_ReleaseObject'
RcppExports.o:RcppExports.cpp:(.text+0x24f): undefined reference to `R_GetCCallable'
RcppExports.o:RcppExports.cpp:(.text+0x262): undefined reference to `__cxa_guard_release'
RcppExports.o:RcppExports.cpp:(.text+0x274): undefined reference to `Rf_isNull'
RcppExports.o:RcppExports.cpp:(.text+0x296): undefined reference to `R_ReleaseObject'
RcppExports.o:RcppExports.cpp:(.text+0x2b4): undefined reference to `Rf_isNull'
RcppExports.o:RcppExports.cpp:(.text+0x2d2): undefined reference to `R_ReleaseObject'
RcppExports.o:RcppExports.cpp:(.text+0x2f3): undefined reference to `R_GetCCallable'
RcppExports.o:RcppExports.cpp:(.text+0x306): undefined reference to `__cxa_guard_release'
RcppExports.o:RcppExports.cpp:(.text+0x31d): undefined reference to `R_ReleaseObject'
RcppExports.o:RcppExports.cpp:(.text+0x33d): undefined reference to `R_ReleaseObject'
RcppExports.o:RcppExports.cpp:(.text+0x351): undefined reference to `__cxa_guard_abort'
RcppExports.o:RcppExports.cpp:(.text+0x35e): undefined reference to `R_ReleaseObject'
RcppExports.o:RcppExports.cpp:(.text+0x371): undefined reference to `R_ReleaseObject'
RcppExports.o:RcppExports.cpp:(.text+0x379): undefined reference to `_Unwind_Resume'
RcppExports.o:RcppExports.cpp:(.text+0x38b): undefined reference to `R_ReleaseObject'
RcppExports.o:RcppExports.cpp:(.text+0x393): undefined reference to `_Unwind_Resume'
RcppExports.o:RcppExports.cpp:(.text+0x3a2): undefined reference to `__cxa_guard_abort'
RcppExports.o:RcppExports.cpp:(.text+0x3c2): undefined reference to `__imp_R_NilValue'
RcppExports.o:RcppExports.cpp:(.text+0x3e3): undefined reference to `__cxa_guard_acquire'
RcppExports.o:RcppExports.cpp:(.text+0x407): undefined reference to `Rf_isNull'
RcppExports.o:RcppExports.cpp:(.text+0x41c): undefined reference to `R_PreserveObject'
RcppExports.o:RcppExports.cpp:(.text+0x431): undefined reference to `__cxa_guard_acquire'
RcppExports.o:RcppExports.cpp:(.text+0x45b): undefined reference to `Rf_isNull'
RcppExports.o:RcppExports.cpp:(.text+0x470): undefined reference to `R_PreserveObject'
RcppExports.o:RcppExports.cpp:(.text+0x48a): undefined reference to `__cxa_guard_acquire'
RcppExports.o:RcppExports.cpp:(.text+0x4ad): undefined reference to `R_ReleaseObject'
RcppExports.o:RcppExports.cpp:(.text+0x4ef): undefined reference to `Rf_isNull'
RcppExports.o:RcppExports.cpp:(.text+0x507): undefined reference to `R_PreserveObject'
RcppExports.o:RcppExports.cpp:(.text+0x519): undefined reference to `R_ReleaseObject'
RcppExports.o:RcppExports.cpp:(.text+0x52b): undefined reference to `R_ReleaseObject'
RcppExports.o:RcppExports.cpp:(.text+0x53d): undefined reference to `R_ReleaseObject'
RcppExports.o:RcppExports.cpp:(.text+0x54f): undefined reference to `R_ReleaseObject'
RcppExports.o:RcppExports.cpp:(.text+0x564): undefined reference to `__cxa_guard_acquire'
RcppExports.o:RcppExports.cpp:(.text+0x582): undefined reference to `R_ReleaseObject'
RcppExports.o:RcppExports.cpp:(.text+0x5af): undefined reference to `R_GetCCallable'
RcppExports.o:RcppExports.cpp:(.text+0x5c2): undefined reference to `__cxa_guard_release'
RcppExports.o:RcppExports.cpp:(.text+0x5df): undefined reference to `R_GetCCallable'
RcppExports.o:RcppExports.cpp:(.text+0x5f2): undefined reference to `__cxa_guard_release'
RcppExports.o:RcppExports.cpp:(.text+0x60f): undefined reference to `R_GetCCallable'
RcppExports.o:RcppExports.cpp:(.text+0x622): undefined reference to `__cxa_guard_release'
RcppExports.o:RcppExports.cpp:(.text+0x634): undefined reference to `Rf_isNull'
RcppExports.o:RcppExports.cpp:(.text+0x656): undefined reference to `R_ReleaseObject'
RcppExports.o:RcppExports.cpp:(.text+0x674): undefined reference to `Rf_isNull'
RcppExports.o:RcppExports.cpp:(.text+0x696): undefined reference to `R_ReleaseObject'
RcppExports.o:RcppExports.cpp:(.text+0x6a4): undefined reference to `Rf_isNull'
RcppExports.o:RcppExports.cpp:(.text+0x6c6): undefined reference to `R_ReleaseObject'
RcppExports.o:RcppExports.cpp:(.text+0x6ef): undefined reference to `R_GetCCallable'
RcppExports.o:RcppExports.cpp:(.text+0x702): undefined reference to `__cxa_guard_release'
RcppExports.o:RcppExports.cpp:(.text+0x720): undefined reference to `R_ReleaseObject'
RcppExports.o:RcppExports.cpp:(.text+0x73d): undefined reference to `R_ReleaseObject'
RcppExports.o:RcppExports.cpp:(.text+0x75d): undefined reference to `R_ReleaseObject'
RcppExports.o:RcppExports.cpp:(.text+0x774): undefined reference to `__cxa_guard_abort'
RcppExports.o:RcppExports.cpp:(.text+0x783): undefined reference to `R_ReleaseObject'
RcppExports.o:RcppExports.cpp:(.text+0x790): undefined reference to `R_ReleaseObject'
RcppExports.o:RcppExports.cpp:(.text+0x7a2): undefined reference to `R_ReleaseObject'
RcppExports.o:RcppExports.cpp:(.text+0x7c1): undefined reference to `__cxa_begin_catch'
RcppExports.o:RcppExports.cpp:(.text+0x7d1): undefined reference to `Rf_protect'
RcppExports.o:RcppExports.cpp:(.text+0x7d9): undefined reference to `__cxa_end_catch'
RcppExports.o:RcppExports.cpp:(.text+0x7e5): undefined reference to `Rf_install'
RcppExports.o:RcppExports.cpp:(.text+0x7f0): undefined reference to `Rf_lang2'
RcppExports.o:RcppExports.cpp:(.text+0x7f8): undefined reference to `Rf_protect'
RcppExports.o:RcppExports.cpp:(.text+0x7ff): undefined reference to `__imp_R_GlobalEnv'
RcppExports.o:RcppExports.cpp:(.text+0x80a): undefined reference to `Rf_eval'
RcppExports.o:RcppExports.cpp:(.text+0x825): undefined reference to `R_ReleaseObject'
RcppExports.o:RcppExports.cpp:(.text+0x843): undefined reference to `__cxa_end_catch'
RcppExports.o:RcppExports.cpp:(.text+0x84b): undefined reference to `_Unwind_Resume'
RcppExports.o:RcppExports.cpp:(.text+0x850): undefined reference to `__cxa_begin_catch'
RcppExports.o:RcppExports.cpp:(.text+0x869): undefined reference to `std::basic_string<char, std::char_traits<char>, std::allocator<char> >::basic_string(char const*, std::allocator<char> const&)'
RcppExports.o:RcppExports.cpp:(.text+0x879): undefined reference to `Rf_protect'
RcppExports.o:RcppExports.cpp:(.text+0x88f): undefined reference to `std::string::_Rep::_M_dispose(std::allocator<char> const&)'
RcppExports.o:RcppExports.cpp:(.text+0x894): undefined reference to `__cxa_end_catch'
RcppExports.o:RcppExports.cpp:(.text+0x89e): undefined reference to `__cxa_begin_catch'
RcppExports.o:RcppExports.cpp:(.text+0x8a3): undefined reference to `__cxa_end_catch'
RcppExports.o:RcppExports.cpp:(.text+0x8a8): undefined reference to `Rf_onintr'
RcppExports.o:RcppExports.cpp:(.text+0x8c3): undefined reference to `std::string::_Rep::_M_dispose(std::allocator<char> const&)'
RcppExports.o:RcppExports.cpp:(.text+0x8c8): undefined reference to `__cxa_end_catch'
RcppExports.o:RcppExports.cpp:(.text+0x8d0): undefined reference to `_Unwind_Resume'
RcppExports.o:RcppExports.cpp:(.text+0x92e): undefined reference to `R_ReleaseObject'
RcppExports.o:RcppExports.cpp:(.text+0x948): undefined reference to `R_ReleaseObject'
RcppExports.o:RcppExports.cpp:(.text+0x957): undefined reference to `R_ReleaseObject'
RcppExports.o:RcppExports.cpp:(.text+0x99f): undefined reference to `R_ReleaseObject'
RcppExports.o:RcppExports.cpp:(.text+0x9b3): undefined reference to `__cxa_guard_abort'
RcppExports.o:RcppExports.cpp:(.text+0x9cd): undefined reference to `__cxa_guard_abort'
RcppExports.o:RcppExports.cpp:(.text+0x9ea): undefined reference to `__cxa_guard_abort'
RcppExports.o:RcppExports.cpp:(.text+0xa43): undefined reference to `__imp_R_NilValue'
RcppExports.o:RcppExports.cpp:(.text+0xa67): undefined reference to `__cxa_guard_acquire'
RcppExports.o:RcppExports.cpp:(.text+0xb15): undefined reference to `Rf_isNull'
RcppExports.o:RcppExports.cpp:(.text+0xb2d): undefined reference to `R_PreserveObject'
RcppExports.o:RcppExports.cpp:(.text+0xb3f): undefined reference to `R_ReleaseObject'
RcppExports.o:RcppExports.cpp:(.text+0xb54): undefined reference to `__cxa_guard_acquire'
RcppExports.o:RcppExports.cpp:(.text+0xb6e): undefined reference to `R_ReleaseObject'
RcppExports.o:RcppExports.cpp:(.text+0xbcf): undefined reference to `R_GetCCallable'
RcppExports.o:RcppExports.cpp:(.text+0xbe2): undefined reference to `__cxa_guard_release'
RcppExports.o:RcppExports.cpp:(.text+0xbff): undefined reference to `R_GetCCallable'
RcppExports.o:RcppExports.cpp:(.text+0xc12): undefined reference to `__cxa_guard_release'
RcppExports.o:RcppExports.cpp:(.text+0xc24): undefined reference to `Rf_isNull'
RcppExports.o:RcppExports.cpp:(.text+0xc42): undefined reference to `R_ReleaseObject'
RcppExports.o:RcppExports.cpp:(.text+0xc60): undefined reference to `R_ReleaseObject'
RcppExports.o:RcppExports.cpp:(.text+0xc77): undefined reference to `__cxa_guard_abort'
RcppExports.o:RcppExports.cpp:(.text+0xc84): undefined reference to `R_ReleaseObject'
RcppExports.o:RcppExports.cpp:(.text+0xc9f): undefined reference to `__cxa_begin_catch'
RcppExports.o:RcppExports.cpp:(.text+0xcaf): undefined reference to `Rf_protect'
RcppExports.o:RcppExports.cpp:(.text+0xcb7): undefined reference to `__cxa_end_catch'
RcppExports.o:RcppExports.cpp:(.text+0xcc3): undefined reference to `Rf_install'
RcppExports.o:RcppExports.cpp:(.text+0xcce): undefined reference to `Rf_lang2'
RcppExports.o:RcppExports.cpp:(.text+0xcd6): undefined reference to `Rf_protect'
RcppExports.o:RcppExports.cpp:(.text+0xcdd): undefined reference to `__imp_R_GlobalEnv'
RcppExports.o:RcppExports.cpp:(.text+0xce8): undefined reference to `Rf_eval'
RcppExports.o:RcppExports.cpp:(.text+0xcfd): undefined reference to `__cxa_end_catch'
RcppExports.o:RcppExports.cpp:(.text+0xd05): undefined reference to `_Unwind_Resume'
RcppExports.o:RcppExports.cpp:(.text+0xd0a): undefined reference to `__cxa_begin_catch'
RcppExports.o:RcppExports.cpp:(.text+0xd23): undefined reference to `std::basic_string<char, std::char_traits<char>, std::allocator<char> >::basic_string(char const*, std::allocator<char> const&)'
RcppExports.o:RcppExports.cpp:(.text+0xd33): undefined reference to `Rf_protect'
RcppExports.o:RcppExports.cpp:(.text+0xd49): undefined reference to `std::string::_Rep::_M_dispose(std::allocator<char> const&)'
RcppExports.o:RcppExports.cpp:(.text+0xd4e): undefined reference to `__cxa_end_catch'
RcppExports.o:RcppExports.cpp:(.text+0xd58): undefined reference to `__cxa_begin_catch'
RcppExports.o:RcppExports.cpp:(.text+0xd5d): undefined reference to `__cxa_end_catch'
RcppExports.o:RcppExports.cpp:(.text+0xd62): undefined reference to `Rf_onintr'
RcppExports.o:RcppExports.cpp:(.text+0xd7a): undefined reference to `std::string::_Rep::_M_dispose(std::allocator<char> const&)'
RcppExports.o:RcppExports.cpp:(.text+0xd7f): undefined reference to `__cxa_end_catch'
RcppExports.o:RcppExports.cpp:(.text+0xd87): undefined reference to `_Unwind_Resume'
RcppExports.o:RcppExports.cpp:(.text+0xdcd): undefined reference to `R_ReleaseObject'
RcppExports.o:RcppExports.cpp:(.text+0xde9): undefined reference to `__cxa_guard_abort'
RcppExports.o:RcppExports.cpp:(.text+0x18): undefined reference to `std::ios_base::Init::~Init()'
RcppExports.o:RcppExports.cpp:(.text+0x7d): undefined reference to `std::ios_base::~ios_base()'
RcppExports.o:RcppExports.cpp:(.text+0x10d): undefined reference to `std::ios_base::~ios_base()'
SAC_spatial.o:SAC_spatial.cpp:(.text+0x9e): undefined reference to `std::ios_base::~ios_base()'
SAC_spatial.o:SAC_spatial.cpp:(.text+0xa6): undefined reference to `_Unwind_Resume'
SAC_spatial.o:SAC_spatial.cpp:(.text+0x12e): undefined reference to `std::ios_base::~ios_base()'
SAC_spatial.o:SAC_spatial.cpp:(.text+0x136): undefined reference to `_Unwind_Resume'
SAC_spatial.o:SAC_spatial.cpp:(.text+0x16c): undefined reference to `sqrt'
SAC_spatial.o:SAC_spatial.cpp:(.text+0x3e3): undefined reference to `Rf_xlength'
SAC_spatial.o:SAC_spatial.cpp:(.text+0x3ff): undefined reference to `__imp_R_NilValue'
SAC_spatial.o:SAC_spatial.cpp:(.text+0x411): undefined reference to `Rf_allocVector'
SAC_spatial.o:SAC_spatial.cpp:(.text+0x420): undefined reference to `Rf_isNull'
SAC_spatial.o:SAC_spatial.cpp:(.text+0x42f): undefined reference to `__imp_R_NilValue'
SAC_spatial.o:SAC_spatial.cpp:(.text+0x43c): undefined reference to `R_PreserveObject'
SAC_spatial.o:SAC_spatial.cpp:(.text+0x455): undefined reference to `__cxa_guard_acquire'
SAC_spatial.o:SAC_spatial.cpp:(.text+0x483): undefined reference to `__cxa_guard_acquire'
SAC_spatial.o:SAC_spatial.cpp:(.text+0x49f): undefined reference to `Rf_xlength'
SAC_spatial.o:SAC_spatial.cpp:(.text+0x4dc): undefined reference to `operator new[](unsigned long long)'
SAC_spatial.o:SAC_spatial.cpp:(.text+0x87b): undefined reference to `sqrt'
SAC_spatial.o:SAC_spatial.cpp:(.text+0x892): undefined reference to `Rf_isNull'
SAC_spatial.o:SAC_spatial.cpp:(.text+0x89d): undefined reference to `__imp_R_NilValue'
SAC_spatial.o:SAC_spatial.cpp:(.text+0x8ae): undefined reference to `R_ReleaseObject'
SAC_spatial.o:SAC_spatial.cpp:(.text+0x8bd): undefined reference to `__imp_R_NilValue'
SAC_spatial.o:SAC_spatial.cpp:(.text+0x8ce): undefined reference to `R_ReleaseObject'
SAC_spatial.o:SAC_spatial.cpp:(.text+0x8d5): undefined reference to `__imp_R_NilValue'
SAC_spatial.o:SAC_spatial.cpp:(.text+0x8e4): undefined reference to `_Unwind_Resume'
SAC_spatial.o:SAC_spatial.cpp:(.text+0x8f4): undefined reference to `__imp_R_NilValue'
SAC_spatial.o:SAC_spatial.cpp:(.text+0x905): undefined reference to `R_ReleaseObject'
SAC_spatial.o:SAC_spatial.cpp:(.text+0x924): undefined reference to `__imp_R_NilValue'
SAC_spatial.o:SAC_spatial.cpp:(.text+0x935): undefined reference to `R_ReleaseObject'
SAC_spatial.o:SAC_spatial.cpp:(.text+0x93c): undefined reference to `__imp_R_NilValue'
SAC_spatial.o:SAC_spatial.cpp:(.text+0x959): undefined reference to `R_GetCCallable'
SAC_spatial.o:SAC_spatial.cpp:(.text+0x96c): undefined reference to `__cxa_guard_release'
SAC_spatial.o:SAC_spatial.cpp:(.text+0x984): undefined reference to `R_GetCCallable'
SAC_spatial.o:SAC_spatial.cpp:(.text+0x997): undefined reference to `__cxa_guard_release'
SAC_spatial.o:SAC_spatial.cpp:(.text+0x9ab): undefined reference to `__cxa_guard_abort'
SAC_spatial.o:SAC_spatial.cpp:(.text+0x18): undefined reference to `std::ios_base::Init::~Init()'
SAC_spatial.o:SAC_spatial.cpp:(.text+0x7d): undefined reference to `std::ios_base::~ios_base()'
SAC_spatial.o:SAC_spatial.cpp:(.text+0x10d): undefined reference to `std::ios_base::~ios_base()'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x9e): undefined reference to `std::ios_base::~ios_base()'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0xa6): undefined reference to `_Unwind_Resume'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x12e): undefined reference to `std::ios_base::~ios_base()'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x136): undefined reference to `_Unwind_Resume'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1a9): undefined reference to `__imp_R_NilValue'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x22d): undefined reference to `Rf_allocVector'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x240): undefined reference to `Rf_isNull'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x255): undefined reference to `R_PreserveObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x272): undefined reference to `__cxa_guard_acquire'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x2bc): undefined reference to `Rf_allocVector'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x2cf): undefined reference to `Rf_isNull'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x2e4): undefined reference to `R_PreserveObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x301): undefined reference to `__cxa_guard_acquire'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x336): undefined reference to `Rf_allocVector'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x341): undefined reference to `Rf_isNull'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x356): undefined reference to `R_PreserveObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x36b): undefined reference to `__cxa_guard_acquire'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x393): undefined reference to `Rf_allocVector'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x39e): undefined reference to `Rf_isNull'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x3b3): undefined reference to `R_PreserveObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x3c8): undefined reference to `__cxa_guard_acquire'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x3f6): undefined reference to `__cxa_guard_acquire'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x419): undefined reference to `__cxa_guard_acquire'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x439): undefined reference to `Rf_allocVector'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x444): undefined reference to `Rf_isNull'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x459): undefined reference to `R_PreserveObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x46e): undefined reference to `__cxa_guard_acquire'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x48a): undefined reference to `Rf_xlength'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x4a0): undefined reference to `Rf_rpois'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x4c1): undefined reference to `__cxa_guard_acquire'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x4e7): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x51a): undefined reference to `Rf_isNull'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x52f): undefined reference to `R_PreserveObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x544): undefined reference to `__cxa_guard_acquire'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x56a): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x5a4): undefined reference to `Rf_isNull'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x5bb): undefined reference to `R_PreserveObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x5d0): undefined reference to `__cxa_guard_acquire'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x5fd): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x60f): undefined reference to `Rf_allocVector'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x61a): undefined reference to `Rf_isNull'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x62f): undefined reference to `R_PreserveObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x644): undefined reference to `__cxa_guard_acquire'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x6a8): undefined reference to `R_finite'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x6c2): undefined reference to `Rf_allocVector'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x6cd): undefined reference to `Rf_isNull'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x6e2): undefined reference to `R_PreserveObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x6f7): undefined reference to `__cxa_guard_acquire'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x712): undefined reference to `__imp_R_NaN'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x71f): undefined reference to `Rf_xlength'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x754): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x75d): undefined reference to `R_isnancpp'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x777): undefined reference to `Rf_allocVector'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x782): undefined reference to `Rf_isNull'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x797): undefined reference to `R_PreserveObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x7ac): undefined reference to `__cxa_guard_acquire'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x7c7): undefined reference to `__imp_R_NaN'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x7d4): undefined reference to `Rf_xlength'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x7f3): undefined reference to `Rf_isNull'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x808): undefined reference to `R_PreserveObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x81d): undefined reference to `__cxa_guard_acquire'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x83e): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x8c4): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x8e5): undefined reference to `std::basic_string<char, std::char_traits<char>, std::allocator<char> >::basic_string(char const*, std::allocator<char> const&)'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x8f5): undefined reference to `std::basic_string<char, std::char_traits<char>, std::allocator<char> >::basic_string(std::string const&)'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x911): undefined reference to `std::basic_string<char, std::char_traits<char>, std::allocator<char> >::basic_string(char const*, std::allocator<char> const&)'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x91e): undefined reference to `std::basic_string<char, std::char_traits<char>, std::allocator<char> >::basic_string(std::string const&)'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x944): undefined reference to `Rf_allocVector'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x957): undefined reference to `Rf_isNull'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x96c): undefined reference to `R_PreserveObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x993): undefined reference to `Rf_allocVector'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x9a3): undefined reference to `Rf_protect'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x9c5): undefined reference to `SET_VECTOR_ELT'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x9d7): undefined reference to `Rf_mkChar'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x9ec): undefined reference to `SET_STRING_ELT'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0xa09): undefined reference to `SET_VECTOR_ELT'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0xa1e): undefined reference to `Rf_mkChar'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0xa36): undefined reference to `SET_STRING_ELT'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0xa55): undefined reference to `std::basic_string<char, std::char_traits<char>, std::allocator<char> >::basic_string(char const*, std::allocator<char> const&)'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0xa62): undefined reference to `Rf_install'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0xa75): undefined reference to `Rf_setAttrib'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0xa9c): undefined reference to `std::string::_Rep::_M_destroy(std::allocator<char> const&)'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0xaab): undefined reference to `Rf_unprotect'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0xacd): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0xaec): undefined reference to `std::string::_Rep::_M_destroy(std::allocator<char> const&)'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0xb0b): undefined reference to `std::string::_Rep::_M_destroy(std::allocator<char> const&)'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0xb2d): undefined reference to `std::string::_Rep::_M_destroy(std::allocator<char> const&)'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0xb4c): undefined reference to `std::string::_Rep::_M_destroy(std::allocator<char> const&)'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0xb61): undefined reference to `__cxa_guard_acquire'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0xb7f): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0xb8f): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0xba4): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0xbb9): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0xc37): undefined reference to `R_GetCCallable'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0xc4a): undefined reference to `__cxa_guard_release'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0xc62): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0xc7c): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0xc8f): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0xca4): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0xcb9): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0xcc1): undefined reference to `_Unwind_Resume'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0xcc9): undefined reference to `Rf_isNull'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0xce2): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0xcf1): undefined reference to `R_finite'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0xd2b): undefined reference to `Rf_allocVector'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0xd36): undefined reference to `Rf_isNull'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0xd4b): undefined reference to `R_PreserveObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0xd60): undefined reference to `__cxa_guard_acquire'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0xd7c): undefined reference to `Rf_xlength'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0xdab): undefined reference to `R_finite'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0xde0): undefined reference to `__cxa_guard_acquire'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0xe00): undefined reference to `Rf_allocVector'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0xe0b): undefined reference to `Rf_isNull'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0xe20): undefined reference to `R_PreserveObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0xe35): undefined reference to `__cxa_guard_acquire'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0xe51): undefined reference to `Rf_xlength'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0xe65): undefined reference to `unif_rand'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0xe99): undefined reference to `__cxa_guard_acquire'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0xebe): undefined reference to `Rf_allocVector'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0xec9): undefined reference to `Rf_isNull'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0xede): undefined reference to `R_PreserveObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0xef3): undefined reference to `__cxa_guard_acquire'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0xf0f): undefined reference to `Rf_xlength'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0xf44): undefined reference to `R_GetCCallable'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0xf57): undefined reference to `__cxa_guard_release'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0xf65): undefined reference to `R_finite'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0xf93): undefined reference to `__cxa_guard_acquire'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0xfb3): undefined reference to `Rf_allocVector'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0xfbe): undefined reference to `Rf_isNull'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0xfd3): undefined reference to `R_PreserveObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0xfe8): undefined reference to `__cxa_guard_acquire'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1004): undefined reference to `Rf_xlength'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1016): undefined reference to `norm_rand'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x103a): undefined reference to `__cxa_guard_acquire'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1062): undefined reference to `__cxa_guard_acquire'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1082): undefined reference to `Rf_allocVector'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x108d): undefined reference to `Rf_isNull'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x10a2): undefined reference to `R_PreserveObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x10b7): undefined reference to `__cxa_guard_acquire'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x10d3): undefined reference to `Rf_xlength'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x10e5): undefined reference to `norm_rand'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1104): undefined reference to `__cxa_guard_acquire'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x111f): undefined reference to `Rf_isNull'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1138): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1153): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1164): undefined reference to `R_PreserveObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x117c): undefined reference to `R_GetCCallable'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x118f): undefined reference to `__cxa_guard_release'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x11a7): undefined reference to `R_GetCCallable'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x11ba): undefined reference to `__cxa_guard_release'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x11d2): undefined reference to `R_GetCCallable'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x11e5): undefined reference to `__cxa_guard_release'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x11f2): undefined reference to `Rf_isNull'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x120b): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1223): undefined reference to `R_GetCCallable'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1236): undefined reference to `__cxa_guard_release'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1255): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1262): undefined reference to `Rf_isNull'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x127b): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1288): undefined reference to `Rf_isNull'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x12a1): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x12ae): undefined reference to `Rf_isNull'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x12c7): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x12df): undefined reference to `R_GetCCallable'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x12f2): undefined reference to `__cxa_guard_release'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x130a): undefined reference to `R_GetCCallable'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x131d): undefined reference to `__cxa_guard_release'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1335): undefined reference to `R_GetCCallable'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1348): undefined reference to `__cxa_guard_release'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1360): undefined reference to `R_GetCCallable'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1373): undefined reference to `__cxa_guard_release'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1380): undefined reference to `Rf_isNull'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1399): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x13a6): undefined reference to `Rf_isNull'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x13bf): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x13de): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x13ff): undefined reference to `R_GetCCallable'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1412): undefined reference to `__cxa_guard_release'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x142a): undefined reference to `R_GetCCallable'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x143d): undefined reference to `__cxa_guard_release'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1455): undefined reference to `R_GetCCallable'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1468): undefined reference to `__cxa_guard_release'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1480): undefined reference to `R_GetCCallable'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1493): undefined reference to `__cxa_guard_release'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x14ab): undefined reference to `R_GetCCallable'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x14be): undefined reference to `__cxa_guard_release'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x14dd): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x14fc): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1524): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1543): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x156b): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1583): more undefined references to `R_ReleaseObject' follow
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x15c8): undefined reference to `__cxa_guard_abort'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x15e7): undefined reference to `__cxa_guard_abort'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x15f4): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1618): undefined reference to `__cxa_guard_abort'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x162e): undefined reference to `__cxa_guard_abort'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1664): undefined reference to `__cxa_guard_abort'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1680): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x16a6): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x16cc): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x16f2): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1717): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x173d): more undefined references to `R_ReleaseObject' follow
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x176b): undefined reference to `__cxa_guard_abort'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x179e): undefined reference to `__cxa_guard_abort'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x17c6): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x17ef): undefined reference to `__cxa_guard_abort'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1819): undefined reference to `__cxa_guard_abort'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x183f): undefined reference to `__cxa_guard_abort'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x186e): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1896): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x18ae): undefined reference to `R_GetCCallable'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x18c1): undefined reference to `__cxa_guard_release'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x18da): undefined reference to `__cxa_guard_abort'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x18eb): undefined reference to `Rf_isNull'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1900): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x192c): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1958): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x196f): undefined reference to `Rf_isNull'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1984): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x199c): undefined reference to `R_GetCCallable'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x19af): undefined reference to `__cxa_guard_release'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x19ce): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x19e2): undefined reference to `__cxa_guard_abort'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1a18): undefined reference to `Rf_isNull'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1a2d): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1a47): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1a60): undefined reference to `std::string::_Rep::_M_dispose(std::allocator<char> const&)'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1a71): undefined reference to `std::string::_Rep::_M_dispose(std::allocator<char> const&)'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1a85): undefined reference to `std::string::_Rep::_M_dispose(std::allocator<char> const&)'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1a96): undefined reference to `std::string::_Rep::_M_dispose(std::allocator<char> const&)'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1ab5): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1b15): undefined reference to `std::string::_Rep::_M_dispose(std::allocator<char> const&)'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1b27): undefined reference to `Rf_unprotect'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1b3c): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1b8c): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1ba4): undefined reference to `R_GetCCallable'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1bb7): undefined reference to `__cxa_guard_release'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1bd4): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1bf6): undefined reference to `Rf_isNull'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1c0b): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1c32): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1c5f): undefined reference to `R_GetCCallable'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1c72): undefined reference to `__cxa_guard_release'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1cb7): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1cfa): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1d25): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1d43): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1d50): undefined reference to `Rf_isNull'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1d65): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1d8c): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1da4): undefined reference to `R_GetCCallable'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1db7): undefined reference to `__cxa_guard_release'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1dd3): undefined reference to `__cxa_guard_abort'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1dea): undefined reference to `__cxa_guard_abort'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1e02): undefined reference to `R_GetCCallable'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1e15): undefined reference to `__cxa_guard_release'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1e2e): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1e42): undefined reference to `__cxa_guard_abort'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1e56): undefined reference to `__cxa_guard_abort'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1e63): undefined reference to `Rf_isNull'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1e78): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1e92): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1ebc): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1ec9): undefined reference to `Rf_isNull'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1ede): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1ef6): undefined reference to `R_GetCCallable'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1f09): undefined reference to `__cxa_guard_release'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1f28): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1f3c): undefined reference to `__cxa_guard_abort'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1f55): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1f75): undefined reference to `R_GetCCallable'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1f88): undefined reference to `__cxa_guard_release'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1f95): undefined reference to `Rf_isNull'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1faa): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1fc8): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1fdc): undefined reference to `__cxa_guard_abort'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x1ff8): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x201f): undefined reference to `R_GetCCallable'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x2032): undefined reference to `__cxa_guard_release'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x203f): undefined reference to `Rf_isNull'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x2058): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x2070): undefined reference to `R_GetCCallable'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x2083): undefined reference to `__cxa_guard_release'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x209b): undefined reference to `R_GetCCallable'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x20ae): undefined reference to `__cxa_guard_release'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x20c2): undefined reference to `__cxa_guard_abort'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x20d6): undefined reference to `__cxa_guard_abort'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x20ed): undefined reference to `__cxa_guard_abort'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x210c): undefined reference to `R_ReleaseObject'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x2120): undefined reference to `__cxa_guard_abort'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x18): undefined reference to `std::ios_base::Init::~Init()'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x7d): undefined reference to `std::ios_base::~ios_base()'
rThomas_rcpp.o:rThomas_rcpp.cpp:(.text+0x10d): undefined reference to `std::ios_base::~ios_base()'
make: *** [MoBspatial.so] Error 1
ERROR: compilation failed for package ‘MoBspatial’
* removing ‘/home/mcglinnd/R/x86_64-pc-linux-gnu-library/3.2/MoBspatial’
Error: Command failed (1)
@dmcglinn dmcglinn added the bug label Sep 12, 2016
@dmcglinn dmcglinn mentioned this issue Sep 12, 2016
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See @FelixMay solution in #3

AlbanSagouis added a commit that referenced this issue Dec 21, 2023
@AlbanSagouis
Merge pull request #2 from AlbanSagouis/patch-2
ec2baac 
Thomas process implementation in R
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