GitHub - ModelDBRepository/117966: Spike Response Model simulator (Jolivet et al. 2004, 2006, 2008)

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README.html		README.html
SRM_challenge_07.fig		SRM_challenge_07.fig
SRM_challenge_07.m		SRM_challenge_07.m
SRM_challenge_08.fig		SRM_challenge_08.fig
SRM_challenge_08.m		SRM_challenge_08.m
data_gui_08.mat		data_gui_08.mat
load_data.m		load_data.m
modeldB_data.mat		modeldB_data.mat
parameters.mat		parameters.mat
screenshot.jpg		screenshot.jpg

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Interactive simulator of Spike Response Models (SRM), adapted from

Jolivet R, Lewis TJ, Gerstner W (2004)
Generalized integrate-and-fire models of neuronal activity approximate
spike trains of a detailed model to a high degree of accuracy.
Neurophysiol 92:959-76

also see,

Jolivet R, Kobayashi R, Rauch A, Naud R, Shinomoto S, Gerstner W
(2008) A benchmark test for a quantitative assessment of simple neuron
models. J Neurosci Meth 169(2):417-424

Renaud Jolivet, Felix Schurmann, Thomas K. Berger, Richard Naud,
Wulfram Gerstner, Arnd Roth (2008) The quantitative single-neuron
modeling competition. Biological Cybernetics 99(4-5):417-426

Files: These are the SRM simulators for 2007, 2008
SRM_challenge_07.m
SRM_challenge_08.m

Files: These are the SRM simulators for 2007, 2008
SRM_challenge_07.m
SRM_challenge_08.m

Usage: type the following at the shell command prompt or just the name
of the file (without the .m) at the matlab command prompt:
matlab SRM_challenge_07
or
matlab SRM_challenge_08
Then:

1. Load data with the pop-up menu (in the upper left corner)
2. Set the parameters
3. Click on the "launch" button
4. To export graph, click on the "Export Graph" button
5. To restart simulator, click on the "Reset" button A data set 1 _08
run is similar to figure 5 in the 2008 paper:

<img src="./screenshot.jpg" alt="screenshot">

To zoom in on the figure press export the traces and use the
magnifying zoom in the new matlab figure window.

Note: Always modify parameters before pressing the launch button
(START SIM in the '07 simulator), and not during a simulation,
otherwise the old parameters will be used.
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