GitHub - ModelDBRepository/140471: Shaping of action potentials by different types of BK channels (Jaffe et al., 2011)

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Name		Name	Last commit message	Last commit date
Latest commit History 2 Commits
mods		mods
Figure5Plots.pxp		Figure5Plots.pxp
README		README
channels.ses		channels.ses
figure5.hoc		figure5.hoc
mosinit.hoc		mosinit.hoc
trace_a_0.dat		trace_a_0.dat
trace_a_1.dat		trace_a_1.dat
trace_a_2.dat		trace_a_2.dat
trace_a_3.dat		trace_a_3.dat
trace_a_4.dat		trace_a_4.dat
trace_a_5.dat		trace_a_5.dat
trace_a_6.dat		trace_a_6.dat
trace_a_7.dat		trace_a_7.dat
trace_a_8.dat		trace_a_8.dat
trace_ab_0.dat		trace_ab_0.dat
trace_ab_1.dat		trace_ab_1.dat
trace_ab_2.dat		trace_ab_2.dat
trace_ab_3.dat		trace_ab_3.dat
trace_ab_4.dat		trace_ab_4.dat
trace_ab_5.dat		trace_ab_5.dat
trace_ab_6.dat		trace_ab_6.dat
trace_ab_7.dat		trace_ab_7.dat
trace_ab_8.dat		trace_ab_8.dat
varybeta.parm		varybeta.parm

Repository files navigation

Files for reproducing Figure 5 from Jaffe, Wang, and Brenner (2011)
using NEURON (http://www.neuron.yale.edu).

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Hoc code:

figure5.hoc	- hoc script to run simulation
channels.ses	- descriptions of Na and KDR channels (Aradi and Holmes, 1999)
varybeta.parm 	- Systematic variation of the coeffecient 'S' 

mod files for producing the 'special' executable:

aabBK.mod     - alphabeta4 and alpha BK channel descriptions
Ca.mod	      - calcium channel descriptions (Aradi and Holmes, 1999)

IgorPro (using ver 5.02) 

Figure5plots.pxp   - IgorPro packed experiment

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Output file convention: trace_BKchannelType_run.dat