Vesicular pool simulations of synaptic depression (Aristizabal and Glavinovic 2004)
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This is the readme for the model associated with the paper: Aristizabal, F. & Glavinovic M.I. (2004) Simulation and parameter estimation of dynamics of synaptic depression. Biol. Cybern. 90: 3-18. Model Description: Simulation of synaptic storage and release Simulation of synaptic storage and release using a Simulink sequential storage model with three vesicular pools. Modeling is modular and easily extendable to the systems with greater number of vesicular pools. Model can be either a time independent system with constant parameters (Three_Pools_Constant.mdl) or a time dependent system, where at least one parameter changes with time (Three_Pools_Variable.mdl). In the example shown (i.e. in Three_Pools_Variable.mdl model) three resistances R2, R3 and R4 change with time as a ramp function. Note that other time dependent functions can be chosen. When simulating both models R and C symbols as well as V3 should be replaced by values of choice. To do that just double click at each sub-system and provide values. Model also needs an input stimulation. We provide an .m file generating such an input (GenPulses). This file should be modified to generate inputs you wish to give. To run it just type GenPulses. All variables (voltages or currents) can be monitored using ‘oscilloscopes’. To see output just click on the scope. They can also be directed to the workspace (out) for saving or further analysis. In order to look into the detailed structure of each modular sub-system please use ‘Look Under Mask’. Models are generated in Simulink (.mdl files) and Matlab (.m files). Running these simulations thus requires both software packages, which can be purchased from MathWorks. These files were supplied by mladen.glavinovic@mcgill.ca
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