Updated Dockerfile

MonashBioinformaticsPlatform · Nov 6, 2022 · 9d63211 · 9d63211
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Showing 2 changed files with 5 additions and 5 deletions.
diff --git a/Dockerfile b/Dockerfile
@@ -5,12 +5,12 @@ RUN apt-get update && apt-get install -yq \
     libhdf5-dev libnetcdf-dev build-essential libgd-dev libbz2-dev libudunits2-dev libproj-dev libgdal-dev \
     texlive-latex-base texlive-fonts-recommended texlive-fonts-extra texlive-latex-extra
 
-RUN Rscript -e 'install.packages(c("devtools", "tidyverse", "ggrepel", "httr", "rjson", "mvtnorm", "tmvtnorm","impute", \
-"pcaMethods", "imputeLCMD", "plotly", "DT", "BiocManager","testthat", "RColorBrewer", "shiny","shinyalert","shinydashboard", \
-"shinyjs", "svglite", "rhandsontable", "shinyBS", "shinyWidgets", "ggVennDiagram", "shinycssloaders"), dependencies=TRUE)'
+RUN Rscript -e 'install.packages(c("devtools", "tidyverse", "ggrepel", "httr", "rjson", "mvtnorm", "tmvtnorm", \
+"imputeLCMD", "plotly", "DT", "BiocManager","testthat", "RColorBrewer", "shiny","shinyalert","shinydashboard", \
+"shinyjs", "svglite", "rhandsontable", "shinyBS", "shinyWidgets", "ggVennDiagram", "shinycssloaders","shiny.info"), dependencies=TRUE)'
 
 #FROM bioconductor/bioconductor_docker:RELEASE_3_15
-RUN Rscript -e 'BiocManager::install(pkgs=c("DEP", "SummarizedExperiment", "limma", "ComplexHeatmap"), ask=F, dependencies=TRUE)'
+RUN Rscript -e 'BiocManager::install(pkgs=c("DEP", "SummarizedExperiment", "limma", "ComplexHeatmap","pcaMethods","impute"), ask=F, dependencies=TRUE)'
 
 COPY ./ /srv/shiny-server/lfq-analyst
 COPY shiny-server.conf /etc/shiny-server/shiny-server.conf

diff --git a/global.R b/global.R
@@ -20,7 +20,7 @@ source("R/volcano_function.R")
 source("R/tests.R")
 source("R/demo_functions.R")
 source("R/enrichment_functions.R")
-VERSION <- "1.2.2"
+VERSION <- "v1.2.2"