BERT-RNA

Introduction

This is the samples for research "Interpretable multi-scale deep learning for RNA methylation analysis across multiple species".

Get Started

basic dictionary

Initial parameters can be modified via configuration/config.py.

Datasets are included in data/RNA_MS.

pretrain model

You should download pretrain model from relevant github repository.

For example, if you want to use DNAbert, you need to edit the corresponding folder name and rename the relevant choice of model in the file 'model/DNAbert.py'.

Here the zipped pre-trained models are also provided, you may refer to it as an example before getting your own model involved.

Usage

python main/train.py