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@MoseleyBioinformaticsLab

Moseley Bioinformatics and Systems Biology Lab

We develop and maintain a set of high-quality, well-documented, open source code repositories for general scientific re-use.

Pinned

  1. GOcats GOcats Public

    A tool for categorizing Gene Ontology into subgraphs of user-defined emergent concepts

    Python 7 2

  2. mwtab mwtab Public

    The mwtab package is a Python library that facilitates reading and writing files in mwTab format used by the Metabolomics Workbench for archival of Mass Spectrometry (MS) and Nuclear Magnetic Reson…

    Python 12 2

  3. academic_tracker academic_tracker Public

    Academic Tracker is a package that can search PubMed, Crossref, ORCID, and Google Scholar for publications given a list of authors or publication citations.

    Python 13 6

  4. ICIKendallTau ICIKendallTau Public

    Information-Content-Informed Kendall-tau in R

    R 6 1

  5. kegg_pull kegg_pull Public

    Package that facilitates pulling database entries from KEGG via its REST API

    Python 8 1

  6. MESSES MESSES Public

    MESSES (Metadata from Experimental SpreadSheets Extraction System) is a Python package that facilitates the conversion of tabular data into other formats.

    Python

Repositories

21 results for all repositories written in Python sorted by last updated
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Showing 10 of 21 repositories
  • gpu_tracker Public

    Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage.

    Python 4 1 5 0 Updated Jun 12, 2024
  • academic_tracker Public

    Academic Tracker is a package that can search PubMed, Crossref, ORCID, and Google Scholar for publications given a list of authors or publication citations.

    Python 13 6 1 0 Updated May 13, 2024
  • mwtab Public

    The mwtab package is a Python library that facilitates reading and writing files in mwTab format used by the Metabolomics Workbench for archival of Mass Spectrometry (MS) and Nuclear Magnetic Resonance (NMR) experimental data.

    Python 12 BSD-3-Clause-Clear 2 6 0 Updated Apr 25, 2024
  • MESSES Public

    MESSES (Metadata from Experimental SpreadSheets Extraction System) is a Python package that facilitates the conversion of tabular data into other formats.

    Python 0 0 5 0 Updated Apr 5, 2024
  • icikt Public
    Python 0 0 3 1 Updated Apr 2, 2024
  • pdb_eda Public

    A Python tool for parsing and analyzing electron density maps data available from the worldwide Protein Data Bank

    Python 12 1 0 0 Updated Sep 28, 2023
  • kegg_pull Public

    Package that facilitates pulling database entries from KEGG via its REST API

    Python 8 1 2 0 Updated Aug 30, 2023
  • GOcats Public

    A tool for categorizing Gene Ontology into subgraphs of user-defined emergent concepts

    Python 7 2 3 0 Updated Jun 16, 2023
  • miagis Public

    Generate and validate GIS metadata.

    Python 0 1 0 0 Updated Feb 28, 2023
  • md_harmonize Public
    Python 0 0 1 0 Updated Feb 4, 2023
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