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@MoseleyBioinformaticsLab

Moseley Bioinformatics and Systems Biology Lab

We develop and maintain a set of high-quality, well-documented, open source code repositories for general scientific re-use.

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  1. GOcats GOcats Public

    A tool for categorizing Gene Ontology into subgraphs of user-defined emergent concepts

    Python 7 2

  2. mwtab mwtab Public

    The mwtab package is a Python library that facilitates reading and writing files in mwTab format used by the Metabolomics Workbench for archival of Mass Spectrometry (MS) and Nuclear Magnetic Reson…

    Python 12 2

  3. academic_tracker academic_tracker Public

    Academic Tracker is a package that can search PubMed, Crossref, ORCID, and Google Scholar for publications given a list of authors or publication citations.

    Python 14 5

  4. ICIKendallTau ICIKendallTau Public

    Information-Content-Informed Kendall-tau in R

    R 6 1

  5. kegg_pull kegg_pull Public

    Package that facilitates pulling database entries from KEGG via its REST API

    Python 9 1

  6. MESSES MESSES Public

    MESSES (Metadata from Experimental SpreadSheets Extraction System) is a Python package that facilitates the conversion of tabular data into other formats.

    Python

Repositories

Showing 10 of 41 repositories
  • manuscript.ICIKendallTau Public
    MoseleyBioinformaticsLab/manuscript.ICIKendallTau’s past year of commit activity
    R 0 CC-BY-4.0 0 4 0 Updated Sep 19, 2024
  • mwFileStatusWebsite Public

    Repository hosting the Metabolomics Workbench File Status Website. A Third party website containing file status and validation information for all publicly available MW analysis data files.

    MoseleyBioinformaticsLab/mwFileStatusWebsite’s past year of commit activity
    HTML 4 BSD-3-Clause-Clear 0 0 0 Updated Sep 15, 2024
  • icikt Public
    MoseleyBioinformaticsLab/icikt’s past year of commit activity
    Python 1 0 3 0 Updated Sep 10, 2024
  • MESSES Public

    MESSES (Metadata from Experimental SpreadSheets Extraction System) is a Python package that facilitates the conversion of tabular data into other formats.

    MoseleyBioinformaticsLab/MESSES’s past year of commit activity
    Python 0 0 5 0 Updated Sep 4, 2024
  • academic_tracker Public

    Academic Tracker is a package that can search PubMed, Crossref, ORCID, and Google Scholar for publications given a list of authors or publication citations.

    MoseleyBioinformaticsLab/academic_tracker’s past year of commit activity
    Python 14 5 1 0 Updated Sep 4, 2024
  • ICIKendallTau Public

    Information-Content-Informed Kendall-tau in R

    MoseleyBioinformaticsLab/ICIKendallTau’s past year of commit activity
    R 6 1 7 0 Updated Aug 9, 2024
  • categoryCompare2 Public

    Enables Gene Ontology (and other feature annotation) enrichment calculations and comparisons between feature sets.

    MoseleyBioinformaticsLab/categoryCompare2’s past year of commit activity
    R 1 1 19 0 Updated Jul 26, 2024
  • mwtab Public

    The mwtab package is a Python library that facilitates reading and writing files in mwTab format used by the Metabolomics Workbench for archival of Mass Spectrometry (MS) and Nuclear Magnetic Resonance (NMR) experimental data.

    MoseleyBioinformaticsLab/mwtab’s past year of commit activity
    Python 12 BSD-3-Clause-Clear 2 6 0 Updated Jul 17, 2024
  • conwell-manuscript.ChronicPancreatitisUrineMetabolomics Public
    MoseleyBioinformaticsLab/conwell-manuscript.ChronicPancreatitisUrineMetabolomics’s past year of commit activity
    R 0 0 1 0 Updated Jun 27, 2024
  • gpu_tracker Public

    Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage.

    MoseleyBioinformaticsLab/gpu_tracker’s past year of commit activity
    Python 4 1 6 0 Updated Jun 12, 2024
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