Mouse Imaging Summer School 2017

In this repository you will find slides and code for the summer school sessions.

Monday

• Why Mouse Structural MRI - Dulcie Vousden
• Mouse MRI Primer - Leigh Spencer Noakes, Aidin Arbabi, and Jacob Ellegood
• Mouse MRS Primer - Leigh Spencer Noakes, Gena Markous, and Brian Nieman
• Intro to bash - Dulcie Vousden

Tuesday

• Intro to R - Chris Hammill
• Intro to Statistics - Jason Lerch
• Basic Anatomical Analysis - Jason Lerch
  • DSURQE Atlas info
  • DSURQE Atlas Download

Wednesday

• Install Notes - Chris Hammill
• Intro to Registration - Darren Fernandes
• Multimodal Imaging - Elizabeth De Guzeman
• Multimodal Analysis - Elizabeth De Guzeman and Yohan Yee

Thursday

• In Vivo MRI - Kamila Szulc
  • 4D atlas paper
  • 4D atlas paper supplementary methods
• Longitudinal Analysis - Lily Qiu and Darren Fernandes
• Longitudinal Registration - Lily Qiu and Darren Fernandes
• Longitudinal Analysis Demo - Darren Fernandes and Lily Qiu
• Longitudinal Anatomy Trees - Jason Lerch

Friday

• Power Analysis and Study Design - Jason Lerch