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Update README.md
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carsen-stringer committed Mar 5, 2021
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Expand Up @@ -32,7 +32,7 @@ You can quickly try out Cellpose on the [website](http://www.cellpose.org) first
You can also run Cellpose in google colab with a GPU:
* a code-based notebook: [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/MouseLand/cellpose/blob/master/notebooks/run_cellpose_GPU.ipynb)
* a more user-friendly notebook for 2D segmentation written by [@pr4deepr](https://github.com/pr4deepr): [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/MouseLand/cellpose/blob/master/notebooks/Cellpose_2D_v0_1.ipynb)
* a user-friendly ZeroCostDL4Mic notebook that includes training cellpose models, written by [@guijacquemet](https://github.com/guijacquemet): [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/HenriquesLab/ZeroCostDL4Mic/blob/master/Colab_notebooks/Beta%20notebooks/Cellpose_2D_ZeroCostDL4Mic.ipynb)
* a user-friendly [ZeroCostDL4Mic](https://github.com/HenriquesLab/ZeroCostDL4Mic) notebook that includes training cellpose models, written by [@guijacquemet](https://github.com/guijacquemet): [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/HenriquesLab/ZeroCostDL4Mic/blob/master/Colab_notebooks/Beta%20notebooks/Cellpose_2D_ZeroCostDL4Mic.ipynb)

The colab notebooks are recommended if you have issues with MKL or run speed on your local computer (and are running 3D volumes). Colab does not allow you to run the GUI, but you can save `*_seg.npy` files in colab that you can download and open in the GUI.

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