Update Cellpose_cell_segmentation_2D_prediction_only.ipynb

MouseLand · Jan 11, 2023 · cc2c3e1 · cc2c3e1
1 parent fb2c90d
commit cc2c3e1
Showing 1 changed file with 2 additions and 3 deletions.
diff --git a/notebooks/Cellpose_cell_segmentation_2D_prediction_only.ipynb b/notebooks/Cellpose_cell_segmentation_2D_prediction_only.ipynb
@@ -33,7 +33,7 @@
         "colab_type": "text"
       },
       "source": [
-        "<a href=\"https://colab.research.google.com/github/MouseLand/cellpose/blob/main/Cellpose_cell_segmentation_2D_prediction_only.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>"
+        "<a href=\"https://colab.research.google.com/github/MouseLand/cellpose/blob/main/notebooks/Cellpose_cell_segmentation_2D_prediction_only.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>"
       ]
     },
     {
@@ -661,7 +661,6 @@
         "outFile.write(\"Model: \"+model_choice+\"\\n\") \n",
         "if diameter == 0:\n",
         "  diameter = \"Automatically estimated by cellpose\"\n",
-        "outFile.write(\"Omni Flag: \"+str(omni)+\"\\n\") \n",
         "outFile.write(\"Diameter: \"+str(diameter)+\"\\n\") \n",
         "outFile.write(\"Flow Threshold: \"+str(flow_threshold)+\"\\n\") \n",
         "outFile.write(\"Cell probability Threshold: \"+str(cellprob_threshold)+\"\\n\") \n",
@@ -732,4 +731,4 @@
       ]
     }
   ]
-}
+}