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carsen-stringer committed Feb 24, 2024
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Expand Up @@ -26,14 +26,13 @@ Please see install instructions [below](README.md/#Installation), and also check

Cellpose3 enables image restoration in the GUI, API and CLI (saved to `_seg.npy`). To learn more...
* Check out the [paper](https://www.biorxiv.org/content/10.1101/2024.02.10.579780v1).
* Check out the paper [thread](https://neuromatch.social/@computingnature/111932247922392030).
* API documentation [here](https://cellpose.readthedocs.io/en/latest/restore.html)
* Example google colab notebook for image restoration: [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/MouseLand/cellpose/blob/main/notebooks/run_cellpose3.ipynb).
* Example google colab notebook for image restoration: [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/MouseLand/cellpose/blob/main/notebooks/run_cellpose3.ipynb), using new `CellposeDenoiseModel`.
* Example google colab notebook with new super-generalist "cyto3" model: [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/MouseLand/cellpose/blob/main/notebooks/run_cyto3.ipynb). Try out the new `cyto3` super-generalist Cellpose model with `model_type="cyto3"`.

denoising | deblurring | upsampling
:-------------------------:|:-------------------------:|:-------------------------:
<img src="http://www.cellpose.org/static/images/poisson_cp3.gif?raw=True" width="300" title="cellpose denoising" alt="cellpose denoising examples"> | <img src="http://www.cellpose.org/static/images/blur_cp3.gif?raw=True" width="300" title="cellpose deblurring" alt="cellpose deblurring examples"> | <img src="http://www.cellpose.org/static/images/downsample_cp3.gif?raw=True" width="300" title="cellpose upsampling" alt="cellpose upsampling examples" vspace = "50">
<img src="http://www.cellpose.org/static/images/poisson_cp3.gif?raw=True" width="350" title="cellpose denoising" alt="cellpose denoising examples"> | <img src="http://www.cellpose.org/static/images/blur_cp3.gif?raw=True" width="350" title="cellpose deblurring" alt="cellpose deblurring examples"> | <img src="http://www.cellpose.org/static/images/downsample_cp3.gif?raw=True" width="350" title="cellpose upsampling" alt="cellpose upsampling examples">

### CITATION

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