added new profiler script (#388)

MouseLand · Jun 9, 2020 · f57b9bf · f57b9bf
1 parent 5ed8a1e
commit f57b9bf
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diff --git a/scripts/dependency_graph/.gitignore b/scripts/dependency_graph/.gitignore
@@ -0,0 +1,2 @@
+*.dot
+*.svg
diff --git a/scripts/build_depgraph.bat → scripts/dependency_graph/build_depgraph.bat b/scripts/build_depgraph.bat → scripts/dependency_graph/build_depgraph.bat
diff --git a/scripts/build_depgraph_cycles.bat → ...ependency_graph/build_depgraph_cycles.bat b/scripts/build_depgraph_cycles.bat → ...ependency_graph/build_depgraph_cycles.bat
diff --git a/scripts/profiler/profile_pipeline.bat b/scripts/profiler/profile_pipeline.bat
@@ -0,0 +1 @@
+py-spy top -- python run_pipeline.py
diff --git a/scripts/profiler/run_pipeline.py b/scripts/profiler/run_pipeline.py
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+from pathlib import  Path
+import suite2p
+from tempfile import TemporaryDirectory
+
+ops = suite2p.default_ops()
+ops['nplanes'] = 2
+ops['nchannels'] = 2
+
+data_path = Path(__file__).joinpath('../../../data/test_data')
+ops['data_path'] = [str(data_path)]
+ops['save_path0'] = TemporaryDirectory().name
+suite2p.run_s2p(ops)