Mouse_brain_borders_NatureProtocols

This repository contains example code for analyzing scRNAseq and CITE-seq data, as described in Scheyltjens et al. (Single-cell RNA and protein profiling of immune cells from the mouse brain and its border tissues, Nature Protocols, 2022)
For this example, we've used CITE-seq data of mouse glioblastoma tumors from Antunes et al (2021)

Code

• Supplementary R Notebook 1.Rmd - code for preprocessing and clustering of a scRNAseq/CITE-seq dataset
• Supplementary R Notebook 2.Rmd - code for preprocessing and clustering of the ADT portion from a CITE-seq dataset

Primary contact:

Kiavash Movahedi, PhD

Professor
Laboratory for Molecular and Cellular Therapy\ Vrije Universiteit Brussel
Laarbeeklaan 103, Brussels Belgium
kiavash.movahedi@vub.be

Questions about the code:

Daliya Kancheva, PhD

daliya.kancheva@vub.be